Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0705
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58020.1 68416.m06466 DNAJ heat shock N-terminal domain-conta...    27   6.9  
At1g72380.1 68414.m08372 expressed protein                             27   6.9  
At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)...    26   9.1  
At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)...    26   9.1  
At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)...    26   9.1  
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    26   9.1  
At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim...    26   9.1  

>At3g58020.1 68416.m06466 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 580

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -2

Query: 318 HTKTESFIRSVTTRHIISVLHISNSWTRHLLLTYL 214
           HT T+  I+S ++  +++V  +++S    LL+TY+
Sbjct: 393 HTSTKKLIKSCSSTKMMTVKSVTSSLILILLITYV 427


>At1g72380.1 68414.m08372 expressed protein
          Length = 190

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 312 KTESFIRSVTTRHIISVLHISNSWTRHLLLTYLMRRLDVTILGDVPSIMFTGVIL 148
           KT   ++ ++ R +  VLH  +     LL      RL   IL D+P     GV++
Sbjct: 80  KTSEAMQQISFRDVPKVLHPYDRAAEGLLSAIEAGRLPGDILEDIPCKFVDGVVI 134


>At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)
           similar to SWISS-PROT: Q39043; GI:1303695; luminal
           binding protein (BiP) [Arabidopsis thaliana]
          Length = 613

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 218 YVRSKWRVHEFEIWSTEMICRVVTLRMKDSVLVWLGSK 331
           Y++ K +  E +++S E I  ++  +MK++   +LG K
Sbjct: 133 YIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKK 170


>At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)
           similar to SWISS-PROT: Q39043; GI:1303695; luminal
           binding protein (BiP) [Arabidopsis thaliana]
          Length = 668

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 218 YVRSKWRVHEFEIWSTEMICRVVTLRMKDSVLVWLGSK 331
           Y++ K +  E +++S E I  ++  +MK++   +LG K
Sbjct: 133 YIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKK 170


>At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)
           SWISS-PROT:Q9LKR3 PMID:8888624
          Length = 669

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 218 YVRSKWRVHEFEIWSTEMICRVVTLRMKDSVLVWLGSK 331
           Y++ K +  E +++S E I  ++  +MK++   +LG K
Sbjct: 133 YIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKK 170


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 246 SWTRHLLLTYLMRRLDVTILGDVPSIMFTGVILY 145
           SW R L   YL   L + ++GD    +  G+ +Y
Sbjct: 305 SWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMY 338


>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
           similar to SP|P15034 Xaa-Pro aminopeptidase (EC
           3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
           (Aminoacylproline aminopeptidase) {Escherichia coli};
           contains Pfam profiles PF00557: metallopeptidase family
           M24, PF05195: Aminopeptidase P, N-terminal domain
          Length = 493

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 237 RHLLLTYLMRRLDVTILGDVPSIMFTGVILYP*ITNLNYLKLLRCTQP 94
           R   L  L+    + I+   P  M T V+ Y    + +YL L  C QP
Sbjct: 60  RRKKLVELLPENSLAIISSAPVKMMTDVVPYTFRQDADYLYLTGCQQP 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,184,495
Number of Sequences: 28952
Number of extensions: 121198
Number of successful extensions: 296
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)