Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0699
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   1.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   3.6  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   4.7  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   6.3  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   6.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   8.3  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 527 PQDKTGSNAYLFPFHDFLHQKHISELQ 447
           P ++   N+Y+ P  DF    HI + Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQ 59


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 527 PQDKTGSNAYLFPFHDFLHQKHISELQ 447
           P ++   N+Y+ P  DF    HI + Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQ 59


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 527 PQDKTGSNAYLFPFHDFLHQKHISELQ 447
           P ++   N+Y+ P  DF    HI + Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQ 59


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 527 PQDKTGSNAYLFPFHDFLHQKHISELQ 447
           P ++   N+Y+ P  DF    HI + Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQ 59


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 269 SYSPII*QGIQDASEQQLTLN 331
           SY+ +I   I+++ E++LTLN
Sbjct: 87  SYNALIMMAIRNSPEKRLTLN 107


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 179 FKSLFLIFANSQCYV 135
           FK LF++FA  Q YV
Sbjct: 2   FKVLFVVFACVQAYV 16


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = -2

Query: 472 IKNIYQNFNHS*I-----YCLFVMQNSF 404
           +KN+    NH+ I     YCLFV  N F
Sbjct: 97  LKNLKMVQNHNNIREKSHYCLFVASNCF 124


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = -2

Query: 472 IKNIYQNFNHS*I-----YCLFVMQNSF 404
           +KN+    NH+ I     YCLFV  N F
Sbjct: 97  LKNLKMVQNHNNIREKSHYCLFVASNCF 124


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 148 ELAKIKNKDLNP*PTTFFSKMKKKVL 225
           E  + K K +    ++FFSK+K K++
Sbjct: 148 EFPETKPKKIRGKISSFFSKLKHKIV 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,428
Number of Sequences: 336
Number of extensions: 3545
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)