Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0699
         (617 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.0  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    25   2.0  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   2.6  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.0  
L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.     23   7.9  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 413 LHHKETIYSGMVEVLIYVFDVESREMEKDMHYY 511
           LHH + +++    +  +  +VE +E+EK  H +
Sbjct: 425 LHHHQQVHNQQRILYCFCRNVECKELEKSYHTF 457


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 266 LSYSPII*QGIQDASEQQLTLN--IHMSVSSVIWFSTYG 376
           LSY+ +I Q I  AS+ +LTL+      V +V +F   G
Sbjct: 119 LSYADLITQAISSASDSRLTLSQIYEWMVQNVPYFKDKG 157


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 392 KLSWKTILHHKETIYSGMVEVL 457
           K  WKT L+HKE   + +  +L
Sbjct: 221 KKGWKTTLYHKELFAAALDRIL 242


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +1

Query: 211 KKKVLLMGKSGSGKTSM 261
           K+  LL+GK+GSGK+++
Sbjct: 107 KRANLLVGKNGSGKSAI 123


>L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.
          Length = 511

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 359 WFSTYGIVVVRKLSWKTILHH 421
           W   Y ++  R L+W T L H
Sbjct: 394 WRQMYSMIHFRNLAWGTPLRH 414


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,990
Number of Sequences: 2352
Number of extensions: 14010
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)