Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0687
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 127 1e-29
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 127 1e-29
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 1e-21
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 30 2.3
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 29 3.0
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 29 5.2
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 127 bits (306), Expect = 1e-29
Identities = 64/134 (47%), Positives = 79/134 (58%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
NPLFE PK F IG + P +DL RFV+WPK +RIQRQ+ +L++ LKVPP +N FT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
K A LFK+L KYRPE ++ G N T L+E
Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI-VVKYGLNHVTYLIE 140
Query: 525 KKKAQLVVIAHDVD 566
+ KAQLVVIAHDVD
Sbjct: 141 QSKAQLVVIAHDVD 154
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 568 PIELVLFLPALCR 606
PIELV++LPALCR
Sbjct: 155 PIELVVWLPALCR 167
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 127 bits (306), Expect = 1e-29
Identities = 64/134 (47%), Positives = 79/134 (58%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
NPLFE PK F IG + P +DL RFV+WPK +RIQRQ+ +L++ LKVPP +N FT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
K A LFK+L KYRPE ++ G N T L+E
Sbjct: 66 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI-VVKYGLNHVTYLIE 124
Query: 525 KKKAQLVVIAHDVD 566
+ KAQLVVIAHDVD
Sbjct: 125 QSKAQLVVIAHDVD 138
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 568 PIELVLFLPALCR 606
PIELV++LPALCR
Sbjct: 139 PIELVVWLPALCR 151
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 100 bits (240), Expect = 1e-21
Identities = 57/134 (42%), Positives = 74/134 (55%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
NPLFE PK F IG + P +DL RFVRWPK +RIQRQ+ VL++ LKVPP +N FT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
K ++L + + E ++ G + T L+E
Sbjct: 83 KNLGCQKERLLKRAQAEAEGKTVEAKKPI-----------------VVKYGLDHVTYLIE 125
Query: 525 KKKAQLVVIAHDVD 566
+ KAQLVVIAHDVD
Sbjct: 126 QSKAQLVVIAHDVD 139
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 568 PIELVLFLPALCR 606
PIELV++LPALCR
Sbjct: 140 PIELVVWLPALCR 152
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 263 PXPAPEGCTSAXSESAPSDQP 325
P PAPE +A E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -2
Query: 284 SLLALDXDILGPSYKSGQVPSWLNALTNGKVLW---XXLEERIHDLLG-LNLFDHQWGGG 117
SL L+ + + SG++PS L+ LT K+LW +I D +G NL D ++ G
Sbjct: 164 SLFKLEELFIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLRFQGN 223
Query: 116 YFTS-LPSS 93
F LP++
Sbjct: 224 SFQGPLPAN 232
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 210 PDQWQSSLAXSRREDSRSSWAQPF*PPMGRR 118
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,578
Number of Sequences: 37544
Number of extensions: 323561
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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