Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0687
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             139   3e-33
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        51   1e-06
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  139 bits (336), Expect = 3e-33
 Identities = 69/134 (51%), Positives = 82/134 (61%)
 Frame = +3

Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
           NPL E  P+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L + LKVPP IN FTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
           + +   LFK+L KYRPET                             ++ G N  T LVE
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148

Query: 525 KKKAQLVVIAHDVD 566
            KKAQLVVIAHDVD
Sbjct: 149 NKKAQLVVIAHDVD 162


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/68 (42%), Positives = 32/68 (47%)
 Frame = +3

Query: 363 LFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVEKKKAQL 542
           LFK+L KYRPET                             ++ G N  T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 543 VVIAHDVD 566
           VVIAHDVD
Sbjct: 64  VVIAHDVD 71


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 590  CQRYAVXWGVPYCIVKGKXRPRCTCTP 670
            C+RY   +    C+   +  PRC C P
Sbjct: 2978 CERYKCRYQGEVCVTDSRNVPRCVCPP 3004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,632,965
Number of Sequences: 59808
Number of extensions: 337543
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)