Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0687
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   159   6e-41
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   7.6  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  159 bits (387), Expect = 6e-41
 Identities = 86/179 (48%), Positives = 104/179 (58%), Gaps = 1/179 (0%)
 Frame = +3

Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
           NPLFE   KN+ IGQ +QP RDLSRFV+WPKYIRIQR +A+LQ+ LK+PPPIN FTQTLD
Sbjct: 35  NPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLD 94

Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
           K TA+ + K   KYRPE                            N +R G N+  K+VE
Sbjct: 95  KPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRANQLRQGINSVVKMVE 154

Query: 525 KKKAQLVVIAHDVD-XH*AGSLPASVMPXXGAXHTXXXXXXXXXXXXVHRKTCTCLALT 698
           +KKAQLV+IAHDVD       LPA +    G  +             V+RKTCTC+ALT
Sbjct: 155 QKKAQLVIIAHDVDPIELVVYLPA-LCRKMGVPY-CIIKGKARLGTLVYRKTCTCVALT 211


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 240 IWTSPELAECPDQWQSSLAXSRREDSRSSWAQPF*PPMGRR 118
           +WT+  +  CP Q Q  L   +++  +    + + PP  R+
Sbjct: 419 LWTTV-VRSCPSQRQRQLQQQQQQQQQQQQGERYVPPQLRQ 458


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,542
Number of Sequences: 2352
Number of extensions: 12102
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)