Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0687
(750 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 170 2e-42
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 170 2e-42
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 170 2e-42
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 170 2e-42
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 170 2e-42
DQ138872-1|ABA86478.1| 1228|Drosophila melanogaster CG12234 prot... 29 6.8
AY118535-1|AAM49904.1| 1241|Drosophila melanogaster LD26789p pro... 29 6.8
AF222746-1|AAG53520.1| 1241|Drosophila melanogaster RanBP21 prot... 29 6.8
AE014298-2905|AAF48995.1| 1241|Drosophila melanogaster CG12234-P... 29 6.8
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 170 bits (414), Expect = 2e-42
Identities = 92/178 (51%), Positives = 107/178 (60%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
N LFE PKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+ LKVPPPI+ F+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
KTTA LFK+L KYRPE+ + + +GTNT TKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 525 KKKAQLVVIAHDVDXH*AGSLPASVMPXXGAXHTXXXXXXXXXXXXVHRKTCTCLALT 698
+KKAQLVVIAHDVD ++ G + V RKTCT LALT
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY-CIVKGKARLGRLVRRKTCTTLALT 210
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 170 bits (414), Expect = 2e-42
Identities = 92/178 (51%), Positives = 107/178 (60%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
N LFE PKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+ LKVPPPI+ F+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
KTTA LFK+L KYRPE+ + + +GTNT TKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 525 KKKAQLVVIAHDVDXH*AGSLPASVMPXXGAXHTXXXXXXXXXXXXVHRKTCTCLALT 698
+KKAQLVVIAHDVD ++ G + V RKTCT LALT
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY-CIVKGKARLGRLVRRKTCTTLALT 210
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 170 bits (414), Expect = 2e-42
Identities = 92/178 (51%), Positives = 107/178 (60%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
N LFE PKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+ LKVPPPI+ F+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
KTTA LFK+L KYRPE+ + + +GTNT TKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 525 KKKAQLVVIAHDVDXH*AGSLPASVMPXXGAXHTXXXXXXXXXXXXVHRKTCTCLALT 698
+KKAQLVVIAHDVD ++ G + V RKTCT LALT
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY-CIVKGKARLGRLVRRKTCTTLALT 210
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 170 bits (414), Expect = 2e-42
Identities = 92/178 (51%), Positives = 107/178 (60%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
N LFE PKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+ LKVPPPI+ F+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
KTTA LFK+L KYRPE+ + + +GTNT TKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 525 KKKAQLVVIAHDVDXH*AGSLPASVMPXXGAXHTXXXXXXXXXXXXVHRKTCTCLALT 698
+KKAQLVVIAHDVD ++ G + V RKTCT LALT
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY-CIVKGKARLGRLVRRKTCTTLALT 210
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 170 bits (414), Expect = 2e-42
Identities = 92/178 (51%), Positives = 107/178 (60%)
Frame = +3
Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
N LFE PKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+ LKVPPPI+ F+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
KTTA LFK+L KYRPE+ + + +GTNT TKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 525 KKKAQLVVIAHDVDXH*AGSLPASVMPXXGAXHTXXXXXXXXXXXXVHRKTCTCLALT 698
+KKAQLVVIAHDVD ++ G + V RKTCT LALT
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY-CIVKGKARLGRLVRRKTCTTLALT 210
>DQ138872-1|ABA86478.1| 1228|Drosophila melanogaster CG12234
protein.
Length = 1228
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 368 EKALSCSLVQCLGKXVDRRGHFQTTLKYSLLAL-DXDILGPSYKSGQVPS 222
+KA C+ +CL + +R+G QT + LL L + + L Y++ Q+P+
Sbjct: 256 DKAFQCNAAECLAQITNRKG--QTKERKPLLQLFNEEPLRYIYQASQIPA 303
>AY118535-1|AAM49904.1| 1241|Drosophila melanogaster LD26789p
protein.
Length = 1241
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 368 EKALSCSLVQCLGKXVDRRGHFQTTLKYSLLAL-DXDILGPSYKSGQVPS 222
+KA C+ +CL + +R+G QT + LL L + + L Y++ Q+P+
Sbjct: 263 DKAFQCNAAECLAQITNRKG--QTKERKPLLQLFNEEPLRYIYQASQIPA 310
>AF222746-1|AAG53520.1| 1241|Drosophila melanogaster RanBP21
protein.
Length = 1241
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 368 EKALSCSLVQCLGKXVDRRGHFQTTLKYSLLAL-DXDILGPSYKSGQVPS 222
+KA C+ +CL + +R+G QT + LL L + + L Y++ Q+P+
Sbjct: 263 DKAFQCNAAECLAQITNRKG--QTKERKPLLQLFNEEPLRYIYQASQIPA 310
>AE014298-2905|AAF48995.1| 1241|Drosophila melanogaster CG12234-PA
protein.
Length = 1241
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 368 EKALSCSLVQCLGKXVDRRGHFQTTLKYSLLAL-DXDILGPSYKSGQVPS 222
+KA C+ +CL + +R+G QT + LL L + + L Y++ Q+P+
Sbjct: 263 DKAFQCNAAECLAQITNRKG--QTKERKPLLQLFNEEPLRYIYQASQIPA 310
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,684,467
Number of Sequences: 53049
Number of extensions: 510958
Number of successful extensions: 1555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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