Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0687
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           129   2e-30
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   129   2e-30
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    28   7.6  
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    28   7.6  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  129 bits (312), Expect = 2e-30
 Identities = 75/179 (41%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
 Frame = +3

Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
           NPLFE  PK F IG  + P +DLSR+++WPK IR+QRQK +L++ LKVPP +N FT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
           K  A  LFK+L KYRPE                              ++ G N  T L+E
Sbjct: 81  KNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPI-VVKYGLNHVTYLIE 139

Query: 525 KKKAQLVVIAHDVD-XH*AGSLPASVMPXXGAXHTXXXXXXXXXXXXVHRKTCTCLALT 698
           + KAQLVVIAHDVD       LPA  +                    VH+KT +CL LT
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPA--LCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLT 196



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +1

Query: 568 PIELVLFLPALCR 606
           PIELV++LPALCR
Sbjct: 154 PIELVVWLPALCR 166


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  129 bits (311), Expect = 2e-30
 Identities = 65/134 (48%), Positives = 80/134 (59%)
 Frame = +3

Query: 165 NPLFEXXPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRXLKVPPPINXFTQTLD 344
           NPLFE  PK F IG  + P +DLSR+++WPK IR+QRQK +L++ LKVPP +N FT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 345 KTTAKGLFKILXKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTXTKLVE 524
           K  A  LFKIL KYRPE                              ++ G N  T L+E
Sbjct: 80  KNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESKKPI-VVKYGLNHVTYLIE 138

Query: 525 KKKAQLVVIAHDVD 566
           + KAQLVVIAHDVD
Sbjct: 139 QNKAQLVVIAHDVD 152



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +1

Query: 568 PIELVLFLPALCR 606
           PIELV++LPALCR
Sbjct: 153 PIELVVWLPALCR 165


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 495 GTNTXTKLVEKKKAQLVVIAHD 560
           G +   KL+EK+ AQLVV+A D
Sbjct: 47  GLHECAKLIEKRVAQLVVLAED 68


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 495 GTNTXTKLVEKKKAQLVVIAHD 560
           G +   KL+EK+ AQLVV+A D
Sbjct: 47  GLHECAKLIEKRVAQLVVLAED 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,455
Number of Sequences: 28952
Number of extensions: 234736
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)