Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0686
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    25   0.64 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.64 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.64 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.9  

>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 199 LILMGLFSGISLIETISPVVFLNFLSCLR 113
           LIL  L   + ++ET++P+ F++F   LR
Sbjct: 40  LILKVLVDQVMILETMTPLDFMDFRCYLR 68


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 199 LILMGLFSGISLIETISPVVFLNFLSCLR 113
           LIL  L   + ++ET++P+ F++F   LR
Sbjct: 100 LILKVLVDQVMILETMTPLDFMDFRCYLR 128


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 199 LILMGLFSGISLIETISPVVFLNFLSCLR 113
           LIL  L   + ++ET++P+ F++F   LR
Sbjct: 100 LILKVLVDQVMILETMTPLDFMDFRCYLR 128


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 507 NYKK*VLGLLYAKVLSLL*WCTRLGNGN 424
           N +K   G ++AK+LS+L     LGN N
Sbjct: 494 NRRKPKPGTIFAKLLSVLTELRTLGNQN 521



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 423 DSHCPNVCTTTRDLIPSRTRGLALTSCN 506
           D + PN      DL PS   G +  SC+
Sbjct: 145 DPYSPNGKIGREDLSPSSLNGYSADSCD 172


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 38  PKPPLYKMRIFSPXSNCRQISFLVF 112
           P PP++   + +P + C   + L+F
Sbjct: 184 PLPPIFPPTMINPSAICESAAQLIF 208


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 38  PKPPLYKMRIFSPXSNCRQISFLVF 112
           P PP++   + +P + C   + L+F
Sbjct: 184 PLPPIFAPTMINPSAICESAAQLLF 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,258
Number of Sequences: 336
Number of extensions: 2980
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)