Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0686
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 118 5e-28
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 118 5e-28
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 27 2.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.7
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 26 4.8
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 25 6.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 6.3
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 25 8.3
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 8.3
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 8.3
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 118 bits (285), Expect = 5e-28
Identities = 65/135 (48%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Frame = +3
Query: 3 VIGRKLPSXXTSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 182
V+GRK+P+ P + VAKSR+WYFL+ + K KK TGEIV
Sbjct: 8 VVGRKVPTEH-EPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEP 66
Query: 183 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-V 359
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I+K V
Sbjct: 67 KPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVV 126
Query: 360 EVIKAAACRRPQVKQ 404
EV K RR VKQ
Sbjct: 127 EVEKKEDVRRNYVKQ 141
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 118 bits (285), Expect = 5e-28
Identities = 65/135 (48%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Frame = +3
Query: 3 VIGRKLPSXXTSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 182
V+GRK+P+ P + VAKSR+WYFL+ + K KK TGEIV
Sbjct: 8 VVGRKVPTEH-EPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEP 66
Query: 183 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-V 359
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I+K V
Sbjct: 67 KPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVV 126
Query: 360 EVIKAAACRRPQVKQ 404
EV K RR VKQ
Sbjct: 127 EVEKKEDVRRNYVKQ 141
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 351 IKVEVIKAAACRRPQV-KQFPTAPSDSHCPNVCTTTRDLIPSRTRGLAL 494
I+ V K A PQ+ KQF P+ P V R LIP++ G+ L
Sbjct: 187 IQKRVRKYIAKTSPQLLKQFDANPASCTDPAVLGVPRSLIPNKFLGINL 235
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 91 PNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRILVSGYAMSL 231
P++V S D+ + SRRP + S RKF K PS + L G SL
Sbjct: 302 PSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351
>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 534 PM*KWNKVSFYIPQKKK 584
P+ KW++ SFY+P+ +K
Sbjct: 351 PLNKWDRSSFYLPKTEK 367
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 79 IQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 204
+ + PN +S IS N R + R LVK L+ + SR RI
Sbjct: 22 VWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 290 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPNS 415
HS R G+ T + + + + SN G + TG T+PN+
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNA 140
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 79 IQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 204
+ + PN +S IS N R + R L+K L+ + SR RI
Sbjct: 22 VWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 326 SPSSFNTDYQSG---SNQGCCVSPSTGQTVPNSTIRFPL---PKRVHHYKRLNTFAYKRP 487
SPSS + +Q S + + VP +++ F + K+ Y L+TF+YKR
Sbjct: 788 SPSSNDDSFQLDDLLSPSSSNLKQQIQKVVPQNSLEFSVGEKEKKAAEYSLLHTFSYKRL 847
Query: 488 S 490
S
Sbjct: 848 S 848
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 572 WDIKRNFIPFLHGFYCYVTY 513
+D+ RN PF HG +C V Y
Sbjct: 94 YDLVRN--PFTHGLFCVVFY 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,546
Number of Sequences: 5004
Number of extensions: 48543
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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