Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0686
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 124 5e-29
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 122 3e-28
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 107 7e-24
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 30 1.2
05_07_0219 - 28474661-28475146,28475979-28476644 28 4.9
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601 28 6.5
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 27 8.5
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107... 27 8.5
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 124 bits (299), Expect = 5e-29
Identities = 60/135 (44%), Positives = 81/135 (60%)
Frame = +3
Query: 3 VIGRKLPSXXTSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 182
V+GR LP+ T + + + + AKS+FWYFLR+LKK KK+ G+I+
Sbjct: 11 VVGRGLPTP-TDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEK 69
Query: 183 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 362
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 70 NPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTA 129
Query: 363 VIKAAACRRPQVKQF 407
+ C+R KQF
Sbjct: 130 TVHFKLCKRDNTKQF 144
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 122 bits (293), Expect = 3e-28
Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Frame = +3
Query: 3 VIGRKLPSXXTS-PNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXX 179
V+GR LP+ P + +K + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 11 VVGRALPTPGDEHPKIYRMK--LWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFE 68
Query: 180 XXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 359
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 69 RNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKT 128
Query: 360 EVIKAAACRRPQVKQF 407
+ C+R KQF
Sbjct: 129 ATVHFKLCKRDNTKQF 144
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 107 bits (257), Expect = 7e-24
Identities = 48/100 (48%), Positives = 63/100 (63%)
Frame = +3
Query: 108 YFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGA 287
YFLR+LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121
Query: 288 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQF 407
V Q Y +M +RHR R IQIIK + C+R KQF
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQF 161
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 374 CCVSPSTGQ--TVPNSTIRFPLPKRVHHYKRLNTFAY 478
C V GQ TV + +R PLP +HH TFAY
Sbjct: 208 CTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFAY 244
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 312 GARHRARAHSIQIIKVEVIKAAACRRPQVKQFPTAPSDSHCPNVCTTTRDLIPS 473
GA+ RA + ++ ++E + R V+ F TAP S P TT PS
Sbjct: 39 GAKRRAEEITEELAQLEKTRMTTWARSVVESFDTAPPPSPPPLSATTPHPPPPS 92
>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
Length = 390
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 472 EGIKSLVVVHTFGQWESDGAVGNCLTCGRRHAAALITSTLIICI 341
E IK LVV +F Q +G C+ + +++T L C+
Sbjct: 263 ETIKPLVVALSFHQMFEGMGLGGCIVQAKFKVRSIVTMVLFFCL 306
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 407 PNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
P+S P+P V H K L F Y RPS F
Sbjct: 152 PSSNFATPMPTSVEHLKLL--FCYLRPSPTF 180
>11_01_0129 -
1073002-1073073,1073463-1073585,1073667-1073732,
1074227-1074347,1074536-1074603,1074792-1074863,
1076045-1076222,1077554-1077888
Length = 344
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = -1
Query: 215 PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEI 108
PD++I+ +DGAF D F +G +E+L+L++E+
Sbjct: 175 PDSRIVYIDGAF-------DLFHAGHVEILRLAREL 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,425
Number of Sequences: 37544
Number of extensions: 321225
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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