Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0686
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   6e-39
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    31   0.53 
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  29   2.8  
SB_56931| Best HMM Match : AFP (HMM E-Value=0.0013)                    29   3.7  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  157 bits (381), Expect = 6e-39
 Identities = 79/135 (58%), Positives = 92/135 (68%), Gaps = 1/135 (0%)
 Frame = +3

Query: 3   VIGRKLPSXX-TSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXX 179
           VIGR +P+   T P  P  K        +VA+S+FWYF+ QLK+ KK+ GEIV       
Sbjct: 212 VIGRLMPNKKLTVP--PLYKMRIFAPDDVVARSKFWYFISQLKRMKKSQGEIVSCQQIYE 269

Query: 180 XXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 359
                  NFGIWLRY+SRSG HNMYREYRDL+V GAVT CYRDM ARHRAR +SIQI+KV
Sbjct: 270 KKPLQIKNFGIWLRYDSRSGTHNMYREYRDLTVSGAVTACYRDMAARHRARGYSIQIMKV 329

Query: 360 EVIKAAACRRPQVKQ 404
           EVI A+  RRP VKQ
Sbjct: 330 EVIPASKARRPHVKQ 344


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 441 VCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM*KWNK 554
           +C T    I SRTRGL  ++CN  V  + + P  KW K
Sbjct: 820 LCDTCAFNITSRTRGLCPSTCNKTV-SVRVDPSGKWQK 856


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/72 (26%), Positives = 27/72 (37%)
 Frame = +3

Query: 291 TQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFPTAPSDSHCPNVCTTTRDLIP 470
           TQ   D+   HR      Q         A      +K+ P    D H P  C+T+   I 
Sbjct: 502 TQNTPDVACNHRQSQTRTQ----SFFAVAGASTGTLKRTPKPHRDRHAPCACSTSTKCIA 557

Query: 471 SRTRGLALTSCN 506
            R   L+L +C+
Sbjct: 558 RRLEHLSLVTCH 569


>SB_56931| Best HMM Match : AFP (HMM E-Value=0.0013)
          Length = 383

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +3

Query: 354 KVEVIKAAACRRPQVKQFPTAPSDSHCPNVCTTTRDLIPSRTRGL 488
           K   I     +   +   P  P  SHC   CTT      +RT G+
Sbjct: 4   KYATISTQGTQNVDISTTPILPVVSHCSTTCTTGEFCFTTRTTGI 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,960
Number of Sequences: 59808
Number of extensions: 375278
Number of successful extensions: 1117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)