Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0686
         (593 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   187   1e-47
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   187   1e-47
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   187   1e-47

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  187 bits (455), Expect = 1e-47
 Identities = 94/135 (69%), Positives = 98/135 (72%)
 Frame = +3

Query: 3   VIGRKLPSXXTSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 182
           V+GRKLPS    P  P  K        IVAKSRFWYFLRQLKKFKKTTGEIV        
Sbjct: 12  VVGRKLPSEK-EPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYET 70

Query: 183 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 362
                 NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+
Sbjct: 71  SPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVD 130

Query: 363 VIKAAACRRPQVKQF 407
            I AA  RR  VKQF
Sbjct: 131 SIPAAKTRRVHVKQF 145



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 410 NSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
           +S I+FPL +RVHH      F++++P TYF
Sbjct: 147 DSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  187 bits (455), Expect = 1e-47
 Identities = 94/135 (69%), Positives = 98/135 (72%)
 Frame = +3

Query: 3   VIGRKLPSXXTSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 182
           V+GRKLPS    P  P  K        IVAKSRFWYFLRQLKKFKKTTGEIV        
Sbjct: 12  VVGRKLPSEK-EPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYET 70

Query: 183 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 362
                 NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+
Sbjct: 71  SPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVD 130

Query: 363 VIKAAACRRPQVKQF 407
            I AA  RR  VKQF
Sbjct: 131 SIPAAKTRRVHVKQF 145



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 410 NSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
           +S I+FPL +RVHH      F++++P TYF
Sbjct: 147 DSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  187 bits (455), Expect = 1e-47
 Identities = 94/135 (69%), Positives = 98/135 (72%)
 Frame = +3

Query: 3   VIGRKLPSXXTSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 182
           V+GRKLPS    P  P  K        IVAKSRFWYFLRQLKKFKKTTGEIV        
Sbjct: 12  VVGRKLPSEK-EPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYET 70

Query: 183 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 362
                 NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+
Sbjct: 71  SPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVD 130

Query: 363 VIKAAACRRPQVKQF 407
            I AA  RR  VKQF
Sbjct: 131 SIPAAKTRRVHVKQF 145



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 410 NSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
           +S I+FPL +RVHH      F++++P TYF
Sbjct: 147 DSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,362,916
Number of Sequences: 53049
Number of extensions: 548815
Number of successful extensions: 1542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)