Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0686
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   146   1e-35

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  146 bits (353), Expect = 1e-35
 Identities = 70/154 (45%), Positives = 95/154 (61%)
 Frame = +3

Query: 3   VIGRKLPSXXTSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 182
           V+GRK+P+    P  P  K +      ++AKSRFWYF+  L++ KK  GEI+        
Sbjct: 15  VVGRKIPTEK-EPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEK 73

Query: 183 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 362
                 N+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+A  I I+KV+
Sbjct: 74  NPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQ 133

Query: 363 VIKAAACRRPQVKQFPTAPSDSHCPNVCTTTRDL 464
            +KA   +R  +K F  A      P+  T  ++L
Sbjct: 134 TVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNL 167



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 410 NSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
           ++ IRFPLP RV   K L+ F   R +T+F
Sbjct: 150 DAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,729
Number of Sequences: 27780
Number of extensions: 279215
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)