Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0686
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         126   1e-29
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    124   4e-29
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   122   1e-28
At3g45880.1 68416.m04965 hypothetical protein                          29   2.3  
At3g13010.1 68416.m01621 hAT dimerisation domain-containing prot...    29   2.3  
At1g79830.1 68414.m09326 expressed protein weak similarity to TA...    28   4.1  
At1g71015.1 68414.m08194 expressed protein                             27   7.1  
At1g08500.1 68414.m00941 plastocyanin-like domain-containing pro...    27   9.4  
At1g03740.1 68414.m00354 protein kinase family protein contains ...    27   9.4  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  126 bits (303), Expect = 1e-29
 Identities = 62/136 (45%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
 Frame = +3

Query: 3   VIGRKLPSXX-TSPNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXX 179
           V+GR LP+     P +  +K        + AKS+FWYFLR+LKK KK+ G+++       
Sbjct: 11  VVGRALPTEKDVQPKIYRMK--LWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYE 68

Query: 180 XXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 359
                  NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK 
Sbjct: 69  KNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKT 128

Query: 360 EVIKAAACRRPQVKQF 407
             + A  C+R   KQF
Sbjct: 129 ATVPAKLCKRESTKQF 144


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  124 bits (299), Expect = 4e-29
 Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
 Frame = +3

Query: 3   VIGRKLPSXXTS-PNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXX 179
           V+GR LP+     P +  +K        ++AKS+FWY+LR+ KK KK+ G+++       
Sbjct: 11  VVGRALPTEKDEQPKIYRMK--LWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEIFE 68

Query: 180 XXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 359
                  NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK 
Sbjct: 69  KNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKT 128

Query: 360 EVIKAAACRRPQVKQF 407
             + A+ C+R   KQF
Sbjct: 129 ATVPASLCKRESTKQF 144


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  122 bits (295), Expect = 1e-28
 Identities = 60/136 (44%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
 Frame = +3

Query: 3   VIGRKLPSXXTS-PNLPCIK*EFSLRXPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXX 179
           V+GR LP+     P +  +K     R  + AKS+FWYF+R+LKK KK+ G+++       
Sbjct: 11  VVGRALPTENDEHPKIYRMK--LWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFE 68

Query: 180 XXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 359
                  N+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK 
Sbjct: 69  KNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKT 128

Query: 360 EVIKAAACRRPQVKQF 407
             + A  C+R   KQF
Sbjct: 129 ATVPAKLCKREITKQF 144


>At3g45880.1 68416.m04965 hypothetical protein
          Length = 431

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -1

Query: 461 VSCSGAHVWAMGI*WCCWELFDLWTATRSSLDYF---HFDNLY 342
           + C G   WA     C  E  +LW  T  S+  F   H++NLY
Sbjct: 140 LDCDGDIEWATEAFGCSPEAVNLWIGTDDSVTSFHKDHYENLY 182


>At3g13010.1 68416.m01621 hAT dimerisation domain-containing protein
           contains Pfam profile PF04937: Protein of unknown
           function (DUF 659), weak hit to PF05699: hAT family
           dimerisation domain
          Length = 572

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 460 SLVV-VHTFGQWESDGAVGNCLTCGRR 383
           S+VV VH +G W  DGA   C  C +R
Sbjct: 3   SIVVNVHDYGTWVEDGARVQCTFCDKR 29


>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
           element modulatory factor (TMF) (Swiss-Prot:P82094)
           [Homo sapiens]
          Length = 927

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +1

Query: 304 EIWELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSQQHHQIPIAQ 438
           E+ E+    ELIQ  L + K SRL      R NSS    Q+PIA+
Sbjct: 746 ELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIAR 790


>At1g71015.1 68414.m08194 expressed protein
          Length = 195

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/98 (22%), Positives = 41/98 (41%)
 Frame = +1

Query: 133 SRRPLVKLSLLRKFQRKAPSRLRILVSGYAMSLXXXXXXXXXXXXXXXXXELSLSATEIW 312
           S+R    + L R ++ + P R+R   SG  MS                   +    TE+ 
Sbjct: 65  SKRIYFMVELPRTWKERTPRRVR---SGIQMSAKERLENLKLSRRSSSDLSVMKKKTEVN 121

Query: 313 ELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSQQHHQI 426
           + + E   ++ +L KWK  +L + +   S+ S +  Q+
Sbjct: 122 DEEREVSSVKLKLPKWKIEKLRKESESGSDFSNKITQL 159


>At1g08500.1 68414.m00941 plastocyanin-like domain-containing
           protein
          Length = 228

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 284 SCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPNSTIRFPLPKRVHHY 454
           S HSV+Q Y   T     ++ +  + + +    +PS    VP S I  PL K   +Y
Sbjct: 70  SNHSVVQTYDFKTYKDCDYDNNENNDTTEWSAANPSATSPVPVS-ISVPLVKEGSNY 125


>At1g03740.1 68414.m00354 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 542

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
 Frame = +1

Query: 313 ELDTEPELIQYRLSKW--K*SRLLRVAVHRSNSS--QQHHQI 426
           +LD +P++++ +L +W  K S++  +   + +SS   +HHQI
Sbjct: 108 DLDIDPKVVKAKLDRWNSKDSKVRLIESEKLSSSMFSEHHQI 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,419
Number of Sequences: 28952
Number of extensions: 258903
Number of successful extensions: 622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)