Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0685
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   3.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   3.8  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   6.7  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   6.7  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   6.7  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 346 PSKNLRVNVPTS*VVKNSFRPSGLTEASY 260
           PSK + V+ PT    KN F  +GLT  SY
Sbjct: 156 PSKTIYVSDPTWGNHKNVFSRAGLTVKSY 184


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 434  FFFFFKSNTLQLLVLDEYK 378
            F +FFK+N +++ VLD +K
Sbjct: 1801 FGYFFKTNRVEMEVLDSFK 1819


>SPCPB16A4.05c |||urease accessory protein UREG
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 46 HAHHGQGHINHDS 84
          H HHG  H +HDS
Sbjct: 27 HDHHGHDHHSHDS 39


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 248 GSEYVGGLCESRRSKRVFNNL*SRNVDS*IFRWLLQY 358
           GSE+  G+ ++R   R+   + S NV+    RW ++Y
Sbjct: 261 GSEH-RGIDDARNLSRIVKKMCSENVEFECNRWWMEY 296


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
 Frame = +3

Query: 288 LKEFLTTYEVGTLT-----RKFFDGFFNICAV 368
           L E L   EVG  T     RK  DG F +C V
Sbjct: 203 LVEALDALEVGNYTIKLNHRKILDGIFTVCGV 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,248
Number of Sequences: 5004
Number of extensions: 28990
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)