Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0685
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59362| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   6.7  

>SB_59362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 221 NVIIFTRSIGSEYVGGLCESRRSKRVFNNL 310
           + + F +SIG+  +G  C S RSK V  NL
Sbjct: 71  SAMTFKQSIGNPVIGCGCSSTRSKDVETNL 100


>SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 FTRSIGSEYVGGLCESRRSKRVFNNL 310
           F +SIG+  +G  C S RSK V  NL
Sbjct: 14  FKQSIGNPVIGCGCSSTRSKAVETNL 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,991
Number of Sequences: 59808
Number of extensions: 204912
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)