Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0685
         (435 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78177-1|AAB36950.1|  528|Drosophila melanogaster Klingon protein.     29   2.7  
AY060363-1|AAL25402.1|  545|Drosophila melanogaster LD10776p pro...    29   2.7  
AE014297-3243|AAF56071.1|  545|Drosophila melanogaster CG6669-PA...    29   2.7  

>U78177-1|AAB36950.1|  528|Drosophila melanogaster Klingon protein.
          Length = 528

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 16  LVLVSIGIRLHAHHGQGHINHDSYIKDRPSQS 111
           L+++S+G  LHAH G G    ++ I +R S S
Sbjct: 47  LIVISLGWLLHAHAGSGGFAVEAAISNRGSNS 78


>AY060363-1|AAL25402.1|  545|Drosophila melanogaster LD10776p
           protein.
          Length = 545

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 16  LVLVSIGIRLHAHHGQGHINHDSYIKDRPSQS 111
           L+++S+G  LHAH G G    ++ I +R S S
Sbjct: 49  LIVISLGWLLHAHAGSGGFAVEAAISNRGSNS 80


>AE014297-3243|AAF56071.1|  545|Drosophila melanogaster CG6669-PA
           protein.
          Length = 545

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 16  LVLVSIGIRLHAHHGQGHINHDSYIKDRPSQS 111
           L+++S+G  LHAH G G    ++ I +R S S
Sbjct: 49  LIVISLGWLLHAHAGSGGFAVEAAISNRGSNS 80


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,543
Number of Sequences: 53049
Number of extensions: 303646
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)