Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0685
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    29   1.5  
AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical...    27   4.4  
U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine rece...    27   5.9  
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 352 KKPSKNL--RVNVPTS*VVKNSFRPSGLTEASYILT 251
           +KP K +  R+ +P   ++KN   P+G ++ SY+LT
Sbjct: 11  QKPCKAVDDRIEIPVETLIKNRKYPNGNSDLSYVLT 46


>AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical
           protein Y17G7B.11 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 421 LNLTPYNY*YWMNTSNIKTAQILKKPSKNLRVNVPTS*VVKNSFRP 284
           LN+TP      +NT++  T  ILKK    + VN+P    V     P
Sbjct: 155 LNITPTAINPMVNTASKNTGLILKKGLVTITVNLPKRGYVAGEIMP 200


>U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 8 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 433 FFSFLNLTPYNY*YWMNTSNIKT---AQILKKPSKNLRVNVPTS*VVKNS 293
           FFSF N+ PY Y   +  S +++    +ILK+ S    V V T+  ++NS
Sbjct: 248 FFSFKNIGPYVYIIKLIGSAVESYFIFKILKRKSARTSVVVTTTRTLQNS 297


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 185 QENVNI*ST*SKNVIIFTRSIGSEYVGGLCESRRSKRVFN 304
           QEN+        NV IF +S G   V  LC S  S+ +FN
Sbjct: 70  QENIQSFRGDPDNVTIFGQSAGGASVDLLCLSPHSRGLFN 109


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 185 QENVNI*ST*SKNVIIFTRSIGSEYVGGLCESRRSKRVFN 304
           QEN+        NV IF +S G   V  LC S  S+ +FN
Sbjct: 187 QENIQSFRGDPDNVTIFGQSAGGASVDLLCLSPHSRGLFN 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,950,107
Number of Sequences: 27780
Number of extensions: 160114
Number of successful extensions: 327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)