Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0675
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    31   0.20 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   5.6  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +2

Query: 320 KDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQ---PLLQHPPSHAALLSNG 490
           ++ +KK  +A++K      L ++ ++RE E + Q+L+A++    P  + P  ++  LSNG
Sbjct: 184 EEAFKKALNAVEKQFQEETLQKQRFEREDESSRQKLSAAMNEDIPPWRQPSKNSQTLSNG 243


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 299 NKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQH 457
           +K+  T  D  +   D +KKNK+    DQR  Q EL    +++   L+   +H
Sbjct: 269 SKINATDADVKQLLSD-VKKNKSKWANDQRIGQEELYEAAEKVVLELRSYTEH 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,165
Number of Sequences: 5004
Number of extensions: 30083
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)