Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0675
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 65 5e-11
08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991 31 1.1
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 30 1.4
05_06_0161 + 26078019-26078510 30 1.9
01_02_0041 + 10507142-10508572 29 4.4
11_06_0511 - 24434007-24436814 28 5.8
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618... 28 7.6
06_03_0602 - 22666227-22668740 28 7.6
05_04_0199 + 18980017-18980759,18981478-18981532 28 7.6
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 28 7.6
02_05_0107 + 25897487-25898059 28 7.6
>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 64.9 bits (151), Expect = 5e-11
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Frame = +2
Query: 5 KRKTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVA----ELSAATSAEPAD 172
KR+T+L T FP + R+ V++ + SP+E AI I+ + A EL S+E
Sbjct: 1691 KRRTVLQTEGSFPALVNRLLVIKSESLEFSPVENAIGMIETRTAALRNELEEPRSSEGDQ 1750
Query: 173 ---AKMLQMVLQGCVTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQ 343
+ LQ +LQG V VN G L + FL+ T+ ++ +L +F C+
Sbjct: 1751 LPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSG-EPATRLRSQELQQLIAALLEFMAVCK 1809
Query: 344 DALKKNKNLIGLDQREYQRELERNLQRLAASL 439
A++ + LIG + +E+ +L Q L A L
Sbjct: 1810 RAIRVHFRLIGEEDQEFHTQLVNGFQSLTAEL 1841
>08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991
Length = 1165
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +1
Query: 217 RQPGAARARAGVPSAGG*RHAAPHPPHQQTTAHLQGLLQEVSRRSK 354
R P A AGVP P PP AHL LL RR +
Sbjct: 8 RAPTTAALAAGVPHRFPAPEGEPPPPRGPNRAHLNALLTSYGRRGR 53
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 197 QGCVTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIG 376
Q CV T+ Q ++ +V L + +GTQ + T K+ KK Q +++N I
Sbjct: 720 QTCVDATLTQTDVQNLKVSLPSITNGTQAENIMDKSSGTTAKESKKKGQKNKIQSRNCIE 779
Query: 377 LDQREYQR 400
R+ Q+
Sbjct: 780 KGLRKKQK 787
>05_06_0161 + 26078019-26078510
Length = 163
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 235 RARAGVPSAGG*RHAAPHPPHQQTTAHLQGLLQEVSRRSKEEQEPNRSG 381
RA AG+PS H H P +TTA +G +EV+R P G
Sbjct: 57 RAAAGLPSLHS--HPRRHGPRPETTAAARGDREEVARSEDGGAVPGAGG 103
>01_02_0041 + 10507142-10508572
Length = 476
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 211 HHRQPGAARARAGVPSAGG 267
HH QPG AR+RA V +A G
Sbjct: 92 HHLQPGLARSRAAVAAAVG 110
>11_06_0511 - 24434007-24436814
Length = 935
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 71 QKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKMLQMVLQGCV 208
QKT+ + S + IEDIQK + L+ K L M L+ C+
Sbjct: 428 QKTESVWSEMAQQIEDIQKSKSSLNNVQKVLYLSYKNLPMHLKNCL 473
>11_06_0390 -
23060034-23060399,23060486-23060573,23061767-23061843,
23062971-23063057
Length = 205
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 ADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQ-REYQRELERNLQRLA--AS 436
A P +T + + D K+ A+ +N+NL L + +YQ +L++NL LA A
Sbjct: 13 AAAVPPAAGITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIAD 72
Query: 437 LQPLLQHPPSHAALLSNG 490
QP Q+P S ++ G
Sbjct: 73 AQP-PQNPGSRPQMMQPG 89
>06_03_0602 - 22666227-22668740
Length = 837
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 380 PDRLGSCSSLERLDTSCRS 324
P LGSC +LE L+ SC S
Sbjct: 587 PSSLGSCKNLEALNLSCNS 605
>05_04_0199 + 18980017-18980759,18981478-18981532
Length = 265
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 404 LERNLQRLAASLQPLLQHPPSHAALLSNGVNKVDYKFQA*TRIGLEFCYNCNNISRIRVN 583
L +L ++ SL PLL PP+ AA L++ + Y A G F +C+ + R R
Sbjct: 87 LASSLAHVSRSLTPLLASPPA-AAALASAAAAMPYLGAAAALAGATF-LSCSRLPRRRCR 144
Query: 584 IP 589
P
Sbjct: 145 NP 146
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 104 VAIEDIQK-KVAELSAATSAEPADAKMLQMVLQGCVTTTVNQGPLELAQVFLAPVADGTQ 280
V EDI+ K +L+A +A P+D + GC + P L + F V
Sbjct: 31 VFYEDIEAPKFVDLTAPDAARPSDDPSWFCLRIGCDQNHEHVDPEALHRSFFMRVMAARS 90
Query: 281 PPTRLTNKLRLTFKDFYKKC 340
P RL +R + KC
Sbjct: 91 PNVRLQKAIRRRNQSSMLKC 110
>02_05_0107 + 25897487-25898059
Length = 190
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 223 PGAARARAGVPSAGG*RHAAPHPPHQQTTAHLQG 324
PGAA R+ + +AG + P PP QQ H +G
Sbjct: 41 PGAAGGRSPLLAAGSVKKQPP-PPQQQIVVHQRG 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,249
Number of Sequences: 37544
Number of extensions: 233653
Number of successful extensions: 1229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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