Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0675
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)                   166   1e-41
SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)                   166   1e-41
SB_59445| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   4e-15
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_33004| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_51312| Best HMM Match : Ded_cyto (HMM E-Value=0.09)                 33   0.27 
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 29   4.5  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   5.9  
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)
          Length = 1025

 Score =  166 bits (404), Expect = 1e-41
 Identities = 88/158 (55%), Positives = 109/158 (68%), Gaps = 7/158 (4%)
 Frame = +2

Query: 5    KRKTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKML 184
            KRKTILT A+ FPY+KTR+ V+ + QI+LSPIEVAIED+Q +  EL  A  +   DAKML
Sbjct: 856  KRKTILTVANSFPYLKTRVSVMHREQIVLSPIEVAIEDMQNRTHELYNAIYSHSPDAKML 915

Query: 185  QMVLQGCVTTTVNQGPLELAQVFLAPVADGTQPP-------TRLTNKLRLTFKDFYKKCQ 343
            QMVLQG + TTVNQGPLE+A VFL    +    P        R  +KLRL+FK+F K+C 
Sbjct: 916  QMVLQGSIGTTVNQGPLEIAIVFLHSDTNADDEPDLEPQVFNRHHHKLRLSFKEFMKRCG 975

Query: 344  DALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQH 457
            DAL  NK LI  DQR YQ+ELERN  +L   L+PLL++
Sbjct: 976  DALHVNKQLIKSDQRAYQKELERNYHKLMEQLEPLLRN 1013


>SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)
          Length = 331

 Score =  166 bits (404), Expect = 1e-41
 Identities = 88/158 (55%), Positives = 109/158 (68%), Gaps = 7/158 (4%)
 Frame = +2

Query: 5   KRKTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKML 184
           KRKTILT A+ FPY+KTR+ V+ + QI+LSPIEVAIED+Q +  EL  A  +   DAKML
Sbjct: 84  KRKTILTVANSFPYLKTRVSVMHREQIVLSPIEVAIEDMQNRTHELYNAIYSHSPDAKML 143

Query: 185 QMVLQGCVTTTVNQGPLELAQVFLAPVADGTQPP-------TRLTNKLRLTFKDFYKKCQ 343
           QMVLQG + TTVNQGPLE+A VFL    +    P        R  +KLRL+FK+F K+C 
Sbjct: 144 QMVLQGSIGTTVNQGPLEIAIVFLHSDTNADDEPDLEPQVFNRHHHKLRLSFKEFMKRCG 203

Query: 344 DALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQH 457
           DAL  NK LI  DQR YQ+ELERN  +L   L+PLL++
Sbjct: 204 DALHVNKQLIKSDQRAYQKELERNYHKLMEQLEPLLRN 241


>SB_59445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 46/129 (35%), Positives = 65/129 (50%)
 Frame = +2

Query: 86  ILSPIEVAIEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVNQGPLELAQVFLAPV 265
           + S + VA +++Q KV EL   T+  P D K LQ+VLQG V+  VN GP   AQ FL   
Sbjct: 26  LTSRMMVAYDEMQNKVKELEQFTTQSPPDMKRLQLVLQGSVSIQVNAGPQAYAQAFLDKT 85

Query: 266 ADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQP 445
                P   +  +L+  +++F K C  AL+ N  LI  DQR YQ +++     L   L  
Sbjct: 86  VCHKHPGKHI-ERLQNVYREFLKFCGKALEINNQLIKEDQRMYQDDMKEKYGLLRTELAK 144

Query: 446 LLQHPPSHA 472
            +   P  A
Sbjct: 145 YIDEEPQAA 153


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = +2

Query: 11  KTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKM--- 181
           +T +T A   P +     V+  T+  +SPI  A+E +Q K A+L +  +   AD  +   
Sbjct: 100 RTSITIASPLPGILKWFPVISTTKEEISPIRNAVETVQNKNADLRSLIARHTADPSLSIN 159

Query: 182 -LQMVLQGCVTTTVNQGPLELAQVFLAP 262
            L M+L G +   V  G  +   +F AP
Sbjct: 160 PLSMILNGVIDAAVMGGTDKYTNIFFAP 187


>SB_33004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +2

Query: 92  SPIEVAIEDIQKKVAELSAATSAEPADAKMLQMVLQGCVT 211
           S + VA +++Q KV EL   T+  P D K LQ+VLQG V+
Sbjct: 31  SRMMVAYDEMQNKVKELEQFTTQSPPDMKRLQLVLQGSVS 70


>SB_51312| Best HMM Match : Ded_cyto (HMM E-Value=0.09)
          Length = 113

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
 Frame = +2

Query: 11  KTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKM--- 181
           +TIL T + FP +    +V+      +SPI  A+E +  K  EL +      AD  +   
Sbjct: 5   RTILYTKYKFPGILCWFEVISSDLEEVSPIRNALETMMSKNKELRSLIGMLKADPNLNVN 64

Query: 182 -LQMVLQGCVTTTVNQGPLELAQVFLAPVADGTQPP--TRLTNKLR 310
            L   LQG V   V  G     + +    A   + P  +R+T + R
Sbjct: 65  PLTQNLQGTVDAAVMGGTSNYEKGYFRSFAKAKKLPEKSRVTARSR 110


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 571  SRYIITIVAKFETYPCLCLELVVDLVHSVAE 479
            SRY+      +E +PCL +E++VDL+  V +
Sbjct: 1047 SRYLRFHPLSYEEWPCLRVEILVDLIAPVIQ 1077


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 551 CSKIRDLSLSMPGTCSRPC 495
           CSK +D+ ++  GTC  PC
Sbjct: 6   CSKNKDIKVAFKGTCDDPC 24


>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPPHQQTTAHLQGLLQEVSRRSKEEQEP 369
           HH     AAR+ AG+PS+      AP             + + +++ SKE +EP
Sbjct: 280 HHQTLTAAARSAAGLPSSPTLAQPAPRAQAPHAGDPYGTVNRSITKVSKEFEEP 333


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 80   QIILSPIEVAIEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVNQGPLE 238
            Q+ L   +V   DI+    ELS    +E  +A  LQ  ++  V+ +  Q P+E
Sbjct: 1048 QVRLQGTQVIQGDIEMTTIELSLPPGSESHEATALQAAVEALVSASQQQIPVE 1100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,545
Number of Sequences: 59808
Number of extensions: 246771
Number of successful extensions: 899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)