Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0675
         (662 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   4.9  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    23   6.5  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   8.6  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 377 LDQREYQRELERNLQRLAASLQPLLQHPPSHAAL 478
           +DQ   Q  LE    +   ++   L+HPPSH ++
Sbjct: 704 VDQWMQQHHLELAPAKTEMTIISSLKHPPSHISI 737


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 560 NISRIRVNIPNKHCY 604
           ++  +R+NIP++ CY
Sbjct: 418 SVCPVRINIPSRRCY 432


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 14/71 (19%), Positives = 28/71 (39%)
 Frame = +2

Query: 113 EDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVNQGPLELAQVFLAPVADGTQPPTR 292
           E +  K+   +    +E +D + ++   +  V TT+N   +    +     +D  QPP  
Sbjct: 758 EAVSSKLPPTAEPEHSESSDVECVERTERLKVKTTINTSRIPSMCIITPTNSDDEQPPAG 817

Query: 293 LTNKLRLTFKD 325
                  T +D
Sbjct: 818 SATAKAATQRD 828


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,975
Number of Sequences: 2352
Number of extensions: 8319
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)