BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0675 (662 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 148 3e-36 Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 71 7e-13 Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 71 7e-13 Z81033-1|CAB02724.1| 199|Caenorhabditis elegans Hypothetical pr... 31 0.73 U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 29 3.9 U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 29 3.9 U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 29 3.9 AL132847-3|CAE18001.1| 91|Caenorhabditis elegans Hypothetical ... 29 3.9 AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 29 3.9 AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 29 3.9 AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 29 3.9 U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate fi... 28 5.1 U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate fi... 28 5.1 AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 6.8 Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical pr... 27 9.0 Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical pr... 27 9.0 >U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein F46H5.4 protein. Length = 2018 Score = 148 bits (359), Expect = 3e-36 Identities = 78/151 (51%), Positives = 104/151 (68%), Gaps = 2/151 (1%) Frame = +2 Query: 5 KRKTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKML 184 K++TILT + FPY+KTR+QVV ++ SPIEVAIEDI+KK ELSAA A+ + KML Sbjct: 1852 KKRTILTVENSFPYIKTRLQVVNRSVKDFSPIEVAIEDIEKKTRELSAA--AQHKNPKML 1909 Query: 185 QMVLQGCVTTTVNQGPLELAQVFL--APVADGTQPPTRLTNKLRLTFKDFYKKCQDALKK 358 M +QG + TTVNQGPLE+A VFL A + D +P RL NKLRL+F+ K +A++ Sbjct: 1910 SMFIQGSIGTTVNQGPLEIANVFLANAMLDDRGRPVDRLQNKLRLSFRHLQCKAMEAIEL 1969 Query: 359 NKNLIGLDQREYQRELERNLQRLAASLQPLL 451 + LIG DQ+EYQR +E N + L+P+L Sbjct: 1970 CRQLIGEDQKEYQRNVEENFESFVTHLKPML 2000 >Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein F22G12.5 protein. Length = 2396 Score = 70.9 bits (166), Expect = 7e-13 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Frame = +2 Query: 38 FPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAE----LSAATSAEPADAKMLQMVLQGC 205 FP + R+ V+ SP+E A + + K + L+AA++ D K LQ++LQG Sbjct: 2223 FPATRRRLPVISVHFEQFSPLEFACQKLNTKAEQIRKTLNAASNGRQLDVKGLQLLLQGA 2282 Query: 206 VTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQ 385 V TVN GPL A+VF L KLR +F++ CQ A++ N + IG DQ Sbjct: 2283 VLPTVNAGPLAYAEVFTKEEQRERYGDDGLV-KLRESFRNLMNSCQLAIEANASAIGSDQ 2341 Query: 386 REYQRELERNLQRLAASLQ 442 + Y L + + LQ Sbjct: 2342 QTYHEVLVSSFDAMHERLQ 2360 >Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein F22G12.5 protein. Length = 2396 Score = 70.9 bits (166), Expect = 7e-13 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Frame = +2 Query: 38 FPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAE----LSAATSAEPADAKMLQMVLQGC 205 FP + R+ V+ SP+E A + + K + L+AA++ D K LQ++LQG Sbjct: 2223 FPATRRRLPVISVHFEQFSPLEFACQKLNTKAEQIRKTLNAASNGRQLDVKGLQLLLQGA 2282 Query: 206 VTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQ 385 V TVN GPL A+VF L KLR +F++ CQ A++ N + IG DQ Sbjct: 2283 VLPTVNAGPLAYAEVFTKEEQRERYGDDGLV-KLRESFRNLMNSCQLAIEANASAIGSDQ 2341 Query: 386 REYQRELERNLQRLAASLQ 442 + Y L + + LQ Sbjct: 2342 QTYHEVLVSSFDAMHERLQ 2360 >Z81033-1|CAB02724.1| 199|Caenorhabditis elegans Hypothetical protein C03C11.1 protein. Length = 199 Score = 31.1 bits (67), Expect = 0.73 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +1 Query: 220 QPGAARARAGVPSAGG*RHAAPHPPHQQTTA 312 +P A A G P AGG AA H P+ QT A Sbjct: 159 KPAAGGASPGAPKAGGPGMAATHDPNYQTLA 189 Score = 28.7 bits (61), Expect = 3.9 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +1 Query: 226 GAARARAGVPSAGG*RHAAPHPPHQQTTA 312 G A AG P GG AA H P+ QT A Sbjct: 117 GGASPTAGAPKPGGPGMAATHDPNYQTLA 145 >U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defective protein 27,isoform c protein. Length = 612 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496 +QRE QRE ER Q + Q L Q HAA +N +N Sbjct: 402 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 439 >U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective protein 27,isoform b protein. Length = 1124 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496 +QRE QRE ER Q + Q L Q HAA +N +N Sbjct: 914 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 951 >U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective protein 27,isoform a protein. Length = 1129 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496 +QRE QRE ER Q + Q L Q HAA +N +N Sbjct: 919 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 956 >AL132847-3|CAE18001.1| 91|Caenorhabditis elegans Hypothetical protein Y48G10A.6 protein. Length = 91 Score = 28.7 bits (61), Expect = 3.9 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = +2 Query: 242 AQVFLAPVADGTQPP 286 A VF APVADGT+PP Sbjct: 13 AIVFSAPVADGTEPP 27 >AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. Length = 1129 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496 +QRE QRE ER Q + Q L Q HAA +N +N Sbjct: 919 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 956 >AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical protein B0041.2b protein. Length = 624 Score = 28.7 bits (61), Expect = 3.9 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPPH 297 HHH+QP A + + GG PH H Sbjct: 126 HHHQQPSFAPSPFSMGGGGGGSQGGPHEQH 155 >AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical protein B0041.2a protein. Length = 706 Score = 28.7 bits (61), Expect = 3.9 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPPH 297 HHH+QP A + + GG PH H Sbjct: 208 HHHQQPSFAPSPFSMGGGGGGSQGGPHEQH 237 >U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate filament, d protein1, isoform b protein. Length = 465 Score = 28.3 bits (60), Expect = 5.1 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = +2 Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQHPPSHAA 475 + K R T++++YKK +KK L Q + + E+ R ++ L L+ + S Sbjct: 275 SKKARKTWEEWYKKKITEIKKRSEKFSLTQNQAREEVLR-IRSLLNELRTKISDADSMTQ 333 Query: 476 LLSNGVNKVDYK 511 LS + + ++ Sbjct: 334 ALSKRIEDMKFR 345 >U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate filament, d protein1, isoform a protein. Length = 575 Score = 28.3 bits (60), Expect = 5.1 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = +2 Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQHPPSHAA 475 + K R T++++YKK +KK L Q + + E+ R ++ L L+ + S Sbjct: 275 SKKARKTWEEWYKKKITEIKKRSEKFSLTQNQAREEVLR-IRSLLNELRTKISDADSMTQ 333 Query: 476 LLSNGVNKVDYK 511 LS + + ++ Sbjct: 334 ALSKRIEDMKFR 345 >AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical protein Y26D4A.9 protein. Length = 1435 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +2 Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRL 427 TNK ++ K KK ++A+ K + IGL + Y +++ ++ + Sbjct: 590 TNKNKIEMKSAIKKVKEAIVKVEKAIGLSYKYYLEKVKEAVEEV 633 >Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical protein ZK792.4b protein. Length = 495 Score = 27.5 bits (58), Expect = 9.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 110 IEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVN 223 + DIQ E +A SA D + L+++L G + +T+N Sbjct: 77 LRDIQSTNGETAAHISAAHGDMRALEILLGGSLKSTMN 114 >Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical protein ZK792.4a protein. Length = 510 Score = 27.5 bits (58), Expect = 9.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 110 IEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVN 223 + DIQ E +A SA D + L+++L G + +T+N Sbjct: 92 LRDIQSTNGETAAHISAAHGDMRALEILLGGSLKSTMN 129 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,064,139 Number of Sequences: 27780 Number of extensions: 183655 Number of successful extensions: 826 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 821 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1486926498 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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