Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0675
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 148 3e-36
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 71 7e-13
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 71 7e-13
Z81033-1|CAB02724.1| 199|Caenorhabditis elegans Hypothetical pr... 31 0.73
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 29 3.9
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 29 3.9
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 29 3.9
AL132847-3|CAE18001.1| 91|Caenorhabditis elegans Hypothetical ... 29 3.9
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 29 3.9
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 29 3.9
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 29 3.9
U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate fi... 28 5.1
U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate fi... 28 5.1
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 6.8
Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical pr... 27 9.0
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
F46H5.4 protein.
Length = 2018
Score = 148 bits (359), Expect = 3e-36
Identities = 78/151 (51%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Frame = +2
Query: 5 KRKTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKML 184
K++TILT + FPY+KTR+QVV ++ SPIEVAIEDI+KK ELSAA A+ + KML
Sbjct: 1852 KKRTILTVENSFPYIKTRLQVVNRSVKDFSPIEVAIEDIEKKTRELSAA--AQHKNPKML 1909
Query: 185 QMVLQGCVTTTVNQGPLELAQVFL--APVADGTQPPTRLTNKLRLTFKDFYKKCQDALKK 358
M +QG + TTVNQGPLE+A VFL A + D +P RL NKLRL+F+ K +A++
Sbjct: 1910 SMFIQGSIGTTVNQGPLEIANVFLANAMLDDRGRPVDRLQNKLRLSFRHLQCKAMEAIEL 1969
Query: 359 NKNLIGLDQREYQRELERNLQRLAASLQPLL 451
+ LIG DQ+EYQR +E N + L+P+L
Sbjct: 1970 CRQLIGEDQKEYQRNVEENFESFVTHLKPML 2000
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 70.9 bits (166), Expect = 7e-13
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Frame = +2
Query: 38 FPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAE----LSAATSAEPADAKMLQMVLQGC 205
FP + R+ V+ SP+E A + + K + L+AA++ D K LQ++LQG
Sbjct: 2223 FPATRRRLPVISVHFEQFSPLEFACQKLNTKAEQIRKTLNAASNGRQLDVKGLQLLLQGA 2282
Query: 206 VTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQ 385
V TVN GPL A+VF L KLR +F++ CQ A++ N + IG DQ
Sbjct: 2283 VLPTVNAGPLAYAEVFTKEEQRERYGDDGLV-KLRESFRNLMNSCQLAIEANASAIGSDQ 2341
Query: 386 REYQRELERNLQRLAASLQ 442
+ Y L + + LQ
Sbjct: 2342 QTYHEVLVSSFDAMHERLQ 2360
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 70.9 bits (166), Expect = 7e-13
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Frame = +2
Query: 38 FPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAE----LSAATSAEPADAKMLQMVLQGC 205
FP + R+ V+ SP+E A + + K + L+AA++ D K LQ++LQG
Sbjct: 2223 FPATRRRLPVISVHFEQFSPLEFACQKLNTKAEQIRKTLNAASNGRQLDVKGLQLLLQGA 2282
Query: 206 VTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQ 385
V TVN GPL A+VF L KLR +F++ CQ A++ N + IG DQ
Sbjct: 2283 VLPTVNAGPLAYAEVFTKEEQRERYGDDGLV-KLRESFRNLMNSCQLAIEANASAIGSDQ 2341
Query: 386 REYQRELERNLQRLAASLQ 442
+ Y L + + LQ
Sbjct: 2342 QTYHEVLVSSFDAMHERLQ 2360
>Z81033-1|CAB02724.1| 199|Caenorhabditis elegans Hypothetical
protein C03C11.1 protein.
Length = 199
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 220 QPGAARARAGVPSAGG*RHAAPHPPHQQTTA 312
+P A A G P AGG AA H P+ QT A
Sbjct: 159 KPAAGGASPGAPKAGGPGMAATHDPNYQTLA 189
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 226 GAARARAGVPSAGG*RHAAPHPPHQQTTA 312
G A AG P GG AA H P+ QT A
Sbjct: 117 GGASPTAGAPKPGGPGMAATHDPNYQTLA 145
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
+QRE QRE ER Q + Q L Q HAA +N +N
Sbjct: 402 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 439
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
protein 27,isoform b protein.
Length = 1124
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
+QRE QRE ER Q + Q L Q HAA +N +N
Sbjct: 914 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 951
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
+QRE QRE ER Q + Q L Q HAA +N +N
Sbjct: 919 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 956
>AL132847-3|CAE18001.1| 91|Caenorhabditis elegans Hypothetical
protein Y48G10A.6 protein.
Length = 91
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 242 AQVFLAPVADGTQPP 286
A VF APVADGT+PP
Sbjct: 13 AIVFSAPVADGTEPP 27
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
+QRE QRE ER Q + Q L Q HAA +N +N
Sbjct: 919 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 956
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPPH 297
HHH+QP A + + GG PH H
Sbjct: 126 HHHQQPSFAPSPFSMGGGGGGSQGGPHEQH 155
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPPH 297
HHH+QP A + + GG PH H
Sbjct: 208 HHHQQPSFAPSPFSMGGGGGGSQGGPHEQH 237
>U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate
filament, d protein1, isoform b protein.
Length = 465
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +2
Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQHPPSHAA 475
+ K R T++++YKK +KK L Q + + E+ R ++ L L+ + S
Sbjct: 275 SKKARKTWEEWYKKKITEIKKRSEKFSLTQNQAREEVLR-IRSLLNELRTKISDADSMTQ 333
Query: 476 LLSNGVNKVDYK 511
LS + + ++
Sbjct: 334 ALSKRIEDMKFR 345
>U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate
filament, d protein1, isoform a protein.
Length = 575
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +2
Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQHPPSHAA 475
+ K R T++++YKK +KK L Q + + E+ R ++ L L+ + S
Sbjct: 275 SKKARKTWEEWYKKKITEIKKRSEKFSLTQNQAREEVLR-IRSLLNELRTKISDADSMTQ 333
Query: 476 LLSNGVNKVDYK 511
LS + + ++
Sbjct: 334 ALSKRIEDMKFR 345
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRL 427
TNK ++ K KK ++A+ K + IGL + Y +++ ++ +
Sbjct: 590 TNKNKIEMKSAIKKVKEAIVKVEKAIGLSYKYYLEKVKEAVEEV 633
>Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical
protein ZK792.4b protein.
Length = 495
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 110 IEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVN 223
+ DIQ E +A SA D + L+++L G + +T+N
Sbjct: 77 LRDIQSTNGETAAHISAAHGDMRALEILLGGSLKSTMN 114
>Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical
protein ZK792.4a protein.
Length = 510
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 110 IEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVN 223
+ DIQ E +A SA D + L+++L G + +T+N
Sbjct: 92 LRDIQSTNGETAAHISAAHGDMRALEILLGGSLKSTMN 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,139
Number of Sequences: 27780
Number of extensions: 183655
Number of successful extensions: 826
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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