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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0675
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...   148   3e-36
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    71   7e-13
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    71   7e-13
Z81033-1|CAB02724.1|  199|Caenorhabditis elegans Hypothetical pr...    31   0.73 
U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying defe...    29   3.9  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    29   3.9  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    29   3.9  
AL132847-3|CAE18001.1|   91|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     29   3.9  
AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical ...    29   3.9  
U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate fi...    28   5.1  
U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    28   5.1  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   6.8  
Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
            F46H5.4 protein.
          Length = 2018

 Score =  148 bits (359), Expect = 3e-36
 Identities = 78/151 (51%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
 Frame = +2

Query: 5    KRKTILTTAHHFPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAELSAATSAEPADAKML 184
            K++TILT  + FPY+KTR+QVV ++    SPIEVAIEDI+KK  ELSAA  A+  + KML
Sbjct: 1852 KKRTILTVENSFPYIKTRLQVVNRSVKDFSPIEVAIEDIEKKTRELSAA--AQHKNPKML 1909

Query: 185  QMVLQGCVTTTVNQGPLELAQVFL--APVADGTQPPTRLTNKLRLTFKDFYKKCQDALKK 358
             M +QG + TTVNQGPLE+A VFL  A + D  +P  RL NKLRL+F+    K  +A++ 
Sbjct: 1910 SMFIQGSIGTTVNQGPLEIANVFLANAMLDDRGRPVDRLQNKLRLSFRHLQCKAMEAIEL 1969

Query: 359  NKNLIGLDQREYQRELERNLQRLAASLQPLL 451
             + LIG DQ+EYQR +E N +     L+P+L
Sbjct: 1970 CRQLIGEDQKEYQRNVEENFESFVTHLKPML 2000


>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
 Frame = +2

Query: 38   FPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAE----LSAATSAEPADAKMLQMVLQGC 205
            FP  + R+ V+       SP+E A + +  K  +    L+AA++    D K LQ++LQG 
Sbjct: 2223 FPATRRRLPVISVHFEQFSPLEFACQKLNTKAEQIRKTLNAASNGRQLDVKGLQLLLQGA 2282

Query: 206  VTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQ 385
            V  TVN GPL  A+VF             L  KLR +F++    CQ A++ N + IG DQ
Sbjct: 2283 VLPTVNAGPLAYAEVFTKEEQRERYGDDGLV-KLRESFRNLMNSCQLAIEANASAIGSDQ 2341

Query: 386  REYQRELERNLQRLAASLQ 442
            + Y   L  +   +   LQ
Sbjct: 2342 QTYHEVLVSSFDAMHERLQ 2360


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
 Frame = +2

Query: 38   FPYVKTRIQVVQKTQIILSPIEVAIEDIQKKVAE----LSAATSAEPADAKMLQMVLQGC 205
            FP  + R+ V+       SP+E A + +  K  +    L+AA++    D K LQ++LQG 
Sbjct: 2223 FPATRRRLPVISVHFEQFSPLEFACQKLNTKAEQIRKTLNAASNGRQLDVKGLQLLLQGA 2282

Query: 206  VTTTVNQGPLELAQVFLAPVADGTQPPTRLTNKLRLTFKDFYKKCQDALKKNKNLIGLDQ 385
            V  TVN GPL  A+VF             L  KLR +F++    CQ A++ N + IG DQ
Sbjct: 2283 VLPTVNAGPLAYAEVFTKEEQRERYGDDGLV-KLRESFRNLMNSCQLAIEANASAIGSDQ 2341

Query: 386  REYQRELERNLQRLAASLQ 442
            + Y   L  +   +   LQ
Sbjct: 2342 QTYHEVLVSSFDAMHERLQ 2360


>Z81033-1|CAB02724.1|  199|Caenorhabditis elegans Hypothetical
           protein C03C11.1 protein.
          Length = 199

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 220 QPGAARARAGVPSAGG*RHAAPHPPHQQTTA 312
           +P A  A  G P AGG   AA H P+ QT A
Sbjct: 159 KPAAGGASPGAPKAGGPGMAATHDPNYQTLA 189



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 226 GAARARAGVPSAGG*RHAAPHPPHQQTTA 312
           G A   AG P  GG   AA H P+ QT A
Sbjct: 117 GGASPTAGAPKPGGPGMAATHDPNYQTLA 145


>U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying
           defective protein 27,isoform c protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
           +QRE QRE ER  Q    + Q L Q    HAA  +N +N
Sbjct: 402 EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 439


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
            protein 27,isoform b protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 380  DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
            +QRE QRE ER  Q    + Q L Q    HAA  +N +N
Sbjct: 914  EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 951


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
            protein 27,isoform a protein.
          Length = 1129

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 380  DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
            +QRE QRE ER  Q    + Q L Q    HAA  +N +N
Sbjct: 919  EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 956


>AL132847-3|CAE18001.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48G10A.6 protein.
          Length = 91

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 242 AQVFLAPVADGTQPP 286
           A VF APVADGT+PP
Sbjct: 13  AIVFSAPVADGTEPP 27


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 380  DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVN 496
            +QRE QRE ER  Q    + Q L Q    HAA  +N +N
Sbjct: 919  EQRE-QRERERERQHQQQAQQALHQQQQQHAAAAANQLN 956


>AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical
           protein B0041.2b protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPPH 297
           HHH+QP  A +   +   GG     PH  H
Sbjct: 126 HHHQQPSFAPSPFSMGGGGGGSQGGPHEQH 155


>AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical
           protein B0041.2a protein.
          Length = 706

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPPH 297
           HHH+QP  A +   +   GG     PH  H
Sbjct: 208 HHHQQPSFAPSPFSMGGGGGGSQGGPHEQH 237


>U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform b protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +2

Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQHPPSHAA 475
           + K R T++++YKK    +KK      L Q + + E+ R ++ L   L+  +    S   
Sbjct: 275 SKKARKTWEEWYKKKITEIKKRSEKFSLTQNQAREEVLR-IRSLLNELRTKISDADSMTQ 333

Query: 476 LLSNGVNKVDYK 511
            LS  +  + ++
Sbjct: 334 ALSKRIEDMKFR 345


>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +2

Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRLAASLQPLLQHPPSHAA 475
           + K R T++++YKK    +KK      L Q + + E+ R ++ L   L+  +    S   
Sbjct: 275 SKKARKTWEEWYKKKITEIKKRSEKFSLTQNQAREEVLR-IRSLLNELRTKISDADSMTQ 333

Query: 476 LLSNGVNKVDYK 511
            LS  +  + ++
Sbjct: 334 ALSKRIEDMKFR 345


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 296 TNKLRLTFKDFYKKCQDALKKNKNLIGLDQREYQRELERNLQRL 427
           TNK ++  K   KK ++A+ K +  IGL  + Y  +++  ++ +
Sbjct: 590 TNKNKIEMKSAIKKVKEAIVKVEKAIGLSYKYYLEKVKEAVEEV 633


>Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK792.4b protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 110 IEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVN 223
           + DIQ    E +A  SA   D + L+++L G + +T+N
Sbjct: 77  LRDIQSTNGETAAHISAAHGDMRALEILLGGSLKSTMN 114


>Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical
           protein ZK792.4a protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 110 IEDIQKKVAELSAATSAEPADAKMLQMVLQGCVTTTVN 223
           + DIQ    E +A  SA   D + L+++L G + +T+N
Sbjct: 92  LRDIQSTNGETAAHISAAHGDMRALEILLGGSLKSTMN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,139
Number of Sequences: 27780
Number of extensions: 183655
Number of successful extensions: 826
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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