Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0675
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.9  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +2

Query: 380 DQREYQRELERNLQRLAASLQPLLQHPPSHAALLSNGVNKVDYK--FQA*TRIGLEFCYN 553
           ++REY++  E + +R     +      P   + LSN  N  +Y            +  YN
Sbjct: 52  NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYN 111

Query: 554 CNNISRIRVNIP 589
            N I +I V +P
Sbjct: 112 INYIEQIPVPVP 123


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +1

Query: 208 HHHRQPGAARARAGVPSAGG*RHAAPHPP 294
           H H  P A  +       G   H  PHPP
Sbjct: 442 HQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,000
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)