Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0674
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   347   4e-96
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   2.6  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    29   2.6  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  347 bits (854), Expect = 4e-96
 Identities = 166/194 (85%), Positives = 178/194 (91%)
 Frame = +3

Query: 93  AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 272
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 273 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 452
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 453 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAI 632
           AGTVRRQAVDV+PLRRVNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAI
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAI 196

Query: 633 KKKDELERVAKSNR 674
           KKKDELERVAKSNR
Sbjct: 197 KKKDELERVAKSNR 210


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 412 STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 585
           S  D + ++ G  V V  +  P   +    S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 554 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 444
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 554 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 444
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 554 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 444
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 554 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 444
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -3

Query: 605 SCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD----PS 438
           SC   F+ N    C N +EC  T +  + P  LVD   G   +  T   T   D    PS
Sbjct: 200 SCKKGFLRNRQGQCVNPTECPATGSTDENPCNLVDCRTGHQCSMSTGKPTCVPDYSDTPS 259

Query: 437 RIFTGSRVD 411
            +F G+  D
Sbjct: 260 PLFPGNGSD 268


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 495 RRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 674
           +RV   +    T    A  RN   + E  A+E I A +   N +A+K +   +  A SNR
Sbjct: 474 QRVQDTVQKARTAVGYAGTRNRSPLREADAEE-IAATEALKNRFAVKSRGTAKAKANSNR 532

Query: 675 *NILLSHL 698
              LL  +
Sbjct: 533 GAALLESI 540


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = -3

Query: 665 FSNTLQLVLLFDGVGVR*TLSCIN*FICNTLCDCFNI-SECSLTCTCAQKPDCLVDSAQG 489
           F N  Q  + F  + +    SC    IC   C    I S+CS TC  A  P C   S   
Sbjct: 36  FCNCQQQPVFFAQISLP-ACSCQQAPICQPQCPRAEINSDCSATCVRACIPSC---SKST 91

Query: 488 *NINGLTTNCTRTTD 444
            N    +T C  T D
Sbjct: 92  GNTFACSTTCESTCD 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,644,300
Number of Sequences: 27780
Number of extensions: 357883
Number of successful extensions: 982
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)