Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0670
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    31   1.2  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    30   1.6  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 590 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGYNFSYYFTGKRK 748
           + N ++ F DP  G DP LY++    F +  V I  +  +GY  SY +  K K
Sbjct: 187 NENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAICTIVFYGY-ISYVYLKKSK 238


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 611 FFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGY 715
           FFDP  G DP LY +++  F +  V I  +  +GY
Sbjct: 200 FFDPGVGKDPNLYVNIYHIFNNMMVSICTVLFYGY 234


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 686 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 591
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 686 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 591
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,205
Number of Sequences: 27780
Number of extensions: 263808
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)