Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0667
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   2.8  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   2.8  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   2.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   3.7  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    25   4.8  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   4.8  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   4.8  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   6.4  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   6.4  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       25   6.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   8.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   8.5  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    24   8.5  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    24   8.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   8.5  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/51 (25%), Positives = 19/51 (37%)
 Frame = +3

Query: 258 CAKDTPRCFPTVKGKPSYVYSDKHTPPCCLRNMREVTKHVLDVLEQAGVRC 410
           C      C P  + KP+Y    KH+         +VT     + E  G+ C
Sbjct: 26  CNDSRITCRPVRESKPTYTSGQKHSALLSKLKRSKVTTDFCKLEESKGIIC 76


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 249 EYGCAKDTPRCFPTVKGKPSYVYSDKHT 332
           E+GC K TPR F  V+     +YSD  T
Sbjct: 263 EFGCNKVTPRVFTEVQA----IYSDNMT 286


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 53  RIIIFADICEDGQGTSTLSYIWTGT*SLKNIARKTNSC 166
           RI+ F  +     G + LSY+++GT    ++A   + C
Sbjct: 255 RIVFFMSVSAGNLGDTALSYLYSGTAVRMSLAIGLHKC 292


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 183 QRSTFYKKYKMKIVVGEDGTVH 248
           Q STFYK++   I + +DG ++
Sbjct: 454 QNSTFYKEFISNISMSDDGRIY 475


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 287 WKTSRCIFSTSIFVYCSI 234
           W+ + C+ ST I+ YCS+
Sbjct: 778 WEVAGCVASTLIYHYCSM 795


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/59 (20%), Positives = 26/59 (44%)
 Frame = -1

Query: 207 ISYRMSTSALSLFQQLFVFLAMFLRLYVPVQMYDRVLVPWPSSHMSANIMILETATQSD 31
           IS   +  +L   +     +   L  ++ +      L PWP+ H + NI++ +  + S+
Sbjct: 4   ISTEKTVESLEAIRHRIAQIVQSLTHFLAILHQSESLSPWPTIHKNFNILLSQIHSLSN 62


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 90  KVQVLYHTFGPGRKVLKTLPEKQIVAEKVKEQRSTFYKKY 209
           KV+++     P RK ++T PE ++  E+  +  + +Y K+
Sbjct: 39  KVKIVKRKKQPARKQIETRPEYEMEPEQPGQVYNLWYNKW 78


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  YLQTYVKMAKVQVLYHTFGPGRKVLKTLPEKQIVAEK 173
           + + Y+K AK  +L     P RK L  L +K I  +K
Sbjct: 342 WAKEYIKKAKDSLLCLPDSPARKALFALADKVITRKK 378


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +1

Query: 259 VLKIHRDVFQQSKANLPTSTRINTLRLAVSEICVKLRNTFWMYWSKLVSDAG 414
           V+K  +++   +  + PT +      L    +  K++  +W ++++L SDAG
Sbjct: 176 VVKSFQNIPVGAYVHYPTISTDMLKSLKQVSLLAKVKMAYWRWFAQLYSDAG 227


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 15  LSKVPDPIALPFPE-SLYLQTYVKMAKVQVLYHTFGPGRKVLKTLPEKQIVAEKVKEQRS 191
           + ++ + + LP     LY +  +K  K  +LY   G G+ +L      Q  A  ++   S
Sbjct: 200 IQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGS 259

Query: 192 TFYKKY 209
              +KY
Sbjct: 260 ELIQKY 265


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 267 DTPRCFPTVKGKPSYVYSDKHTPPCCLRNMREVTKHVLDVLEQAG 401
           D P  +  +    ++V  DK T  CC     E  +H  + L + G
Sbjct: 186 DLPAPWEAIPHLSNHVNHDKSTRICCFSPCIEQIQHSAEALRELG 230


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 171  KVKEQRSTFYKKYKMKIVVGEDGTVHEYGCAKDT 272
            KV E +    KK   ++V      ++EYGC  +T
Sbjct: 2016 KVNESQFFISKKSDFEVVNASSLVLNEYGCEHNT 2049


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 193  VDLCSFTFSATICFSGNVFKTLRPGPNV**STCTLAIFTYVCKYNDSGNGNAI 35
            +DL ++  S  I    N+F  L+    +  +TC   IF  +C  N++   NA+
Sbjct: 1073 LDLVNYADSLQIK-DQNIFDNLQSIKMLDLTTCINGIFESLCSENENTRSNAL 1124


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 258 IHIRVLFHLLRQQSSFYISYRMSTSALSLFQQLFVFLAMFL-RLYVPVQMYDRV 100
           I +  + +LL+++    ISYR+  +A+   + L    A +L R YV   +YDR+
Sbjct: 61  ISLSSIVNLLKEEQE-NISYRVP-NAVPYIKTLVTLRAAYLVRPYVTHNLYDRI 112


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 277 LGVSLAHPYSCTVPSS 230
           L V+LA+P  C VPSS
Sbjct: 121 LDVALANPKDCVVPSS 136


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 18  SKVPDPIALPFPESLYLQTYVKMAKVQVLYHTFG 119
           S +P P+ LP P ++Y Q +       V  +  G
Sbjct: 399 SDMPSPMELPSPSTVYHQVFYPPTSTSVSSYGLG 432


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
            Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = +3

Query: 126  RKVLKTLPEK--QIVAEKV---KEQRSTFYKKYKMKIVVG--EDGTVHEYGCAK 266
            +K L+ L E+  ++ +EKV   +E+   F  K   K V+    DG+V  YGCAK
Sbjct: 839  QKRLEDLNEELTKVRSEKVVITREKTCLFCHKRLGKSVISIFPDGSVVHYGCAK 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,498
Number of Sequences: 5004
Number of extensions: 42888
Number of successful extensions: 126
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)