Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0667
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1500 + 27562593-27562811,27563028-27563080,27563941-275640... 31 0.29
08_01_1049 - 10627636-10628041,10630972-10631115,10631205-106318... 31 0.29
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700... 31 0.38
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776... 30 0.67
12_02_0361 - 17979979-17979982,17980093-17981045 29 1.5
10_01_0294 + 3052598-3052759,3052817-3053311 29 2.0
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261... 29 2.0
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 29 2.0
03_03_0182 - 15190713-15191114,15191247-15191315 28 3.6
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 27 4.7
01_06_1290 - 36023353-36024096 27 4.7
05_05_0330 + 24137188-24137619 27 6.2
05_05_0093 + 22336593-22337198,22338123-22339076 27 6.2
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 27 6.2
01_06_1462 + 37530509-37530874,37531012-37531099,37531352-375314... 27 6.2
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 27 8.2
05_03_0167 - 9111581-9111694,9111864-9112358 27 8.2
01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943... 27 8.2
>08_02_1500 +
27562593-27562811,27563028-27563080,27563941-27564020,
27564660-27564742
Length = 144
Score = 31.5 bits (68), Expect = 0.29
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 308 GRFAFDCWKTSRCIFSTSIFVYCSIFSDN 222
G+FA + K +RCI S +IF CS+ D+
Sbjct: 114 GKFADEAMKNNRCISSVTIFGACSLLYDH 142
>08_01_1049 -
10627636-10628041,10630972-10631115,10631205-10631869,
10632709-10633110
Length = 538
Score = 31.5 bits (68), Expect = 0.29
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 102 LYHTFGPGRKVLKTLPEKQIVAEKVKEQRSTFYKKYKMKIVVGEDGTVHEYGCAKD 269
+ T P VL+T+ E++I+ + K ++KY KIV G Y C D
Sbjct: 357 IIETSTPLTPVLRTVREQKIIVQAGKTSDGYRWRKYGQKIVKGNPNPRSYYRCTHD 412
>02_04_0513 -
23569212-23569675,23569759-23569801,23569888-23570000,
23570099-23570158,23570472-23570541,23570887-23570951,
23571548-23571685,23571764-23573015
Length = 734
Score = 31.1 bits (67), Expect = 0.38
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 258 CAKDTPRCFPTVKGKPSYVYSDKHTPPCCLRNMR---EVTKHVLDVLEQ 395
C + T PT KP + +K + CL ++ EV H++D+L+Q
Sbjct: 299 CVRPTESVRPTESVKPKMTFEEKESFGNCLASLSEDPEVPSHIIDLLQQ 347
>06_02_0133 +
12176059-12176238,12177244-12177362,12177515-12177612,
12177811-12177870,12177920-12177990,12178082-12178276,
12178395-12178441,12178532-12178598,12178660-12178665,
12178689-12178789,12179014-12179115,12179182-12179323,
12179578-12179661,12179760-12180080
Length = 530
Score = 30.3 bits (65), Expect = 0.67
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 380 QNVFRNFTHISETARRSVFIRVDVGRFAFDCWKTSRCIFSTSIFVYCSIFS 228
+++F + I+ET +F+ V + D WKTS F TS+ ++ I S
Sbjct: 315 RHIFATLSFIAETF---IFLYVGMDALDIDKWKTSETSFKTSLGIFGIIIS 362
>12_02_0361 - 17979979-17979982,17980093-17981045
Length = 318
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 403 TPACSSTSRTCFVTSRIFRRQQGG 332
+PA S + +TC +TSR+ R ++GG
Sbjct: 143 SPAYSKSKQTCTLTSRLLRLRRGG 166
>10_01_0294 + 3052598-3052759,3052817-3053311
Length = 218
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 147 PEKQIVAEKVKEQRSTFYKKYKMKIVVGEDGT-VHEYGCAKDTP--RCFPTVKG 299
PEK E+ KE + +KYK+K+V + GT + G K P P++KG
Sbjct: 37 PEK-FTPEQKKEFEAMLQQKYKIKVVADDPGTSSFKDGDGKQAPDGSAQPSIKG 89
>05_01_0333 -
2614123-2614202,2614466-2614553,2614644-2614721,
2614795-2614887,2614982-2615101,2615685-2615726,
2615822-2616091,2617188-2617339,2617771-2618233
Length = 461
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 159 IVAEKVKEQRSTFYKKYKMKI-VVGEDGTVHEYGCAKDTPRCFPTVKGKPSYVYSDKHTP 335
IV V+ TF Y +I V+G D + C P + G+ Y+Y D TP
Sbjct: 235 IVESPVQIPNFTFNLNYAQQIFVLGRDENLCLSISHGKVQYCNPFLCGRHHYMYVDTATP 294
Query: 336 PCCL 347
C L
Sbjct: 295 KCAL 298
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = -2
Query: 290 CW-KTSRC---IFSTSIFVYCSIFSDNNL 216
CW K S C +FS S F Y S FS NN+
Sbjct: 16 CWLKRSLCALVLFSASYFAYFSFFSGNNV 44
>03_03_0182 - 15190713-15191114,15191247-15191315
Length = 156
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 162 VAEKV-KEQRSTFYKKYKMKIVVGEDGTVHEYG 257
V EK+ K ++ T +KYK+K+V + GT G
Sbjct: 17 VKEKIQKTRKGTLVQKYKVKVVADDPGTSSSRG 49
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 276 RCFPTVKGKPSYVYSDKHTPPCCLRNMREVTKHVLDVLEQAGVRCWL 416
RC P S H + E+ K L+ LEQ + CWL
Sbjct: 76 RCSPKFANDACRALSPIHRQALAALGLGELAKMTLNGLEQPDLTCWL 122
>01_06_1290 - 36023353-36024096
Length = 247
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 212 NEDCCRRRWNSTRIWMC*RYTEMFSNSQRQTF 307
+E CCR +NS R +Y+E F Q F
Sbjct: 191 DELCCRNMYNSPRTCRSSKYSEFFKRECPQAF 222
>05_05_0330 + 24137188-24137619
Length = 143
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 93 PWPSSHMSANIMILETAT 40
PWPSSH A + L T T
Sbjct: 90 PWPSSHFLATVAALATGT 107
>05_05_0093 + 22336593-22337198,22338123-22339076
Length = 519
Score = 27.1 bits (57), Expect = 6.2
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 21 KVPDPIALPF-PESLYLQTYVKMAKVQVLYHTFGPGRKVLKTLPEKQ-IVAEKVKEQRST 194
K DPI P +Y T++ + T G+ + Q I+A K+ + +T
Sbjct: 420 KAMDPIFFFMNPRPVYEVTFLNQLPAE---ETCAAGKSAVDVANYVQRILAAKLGFECTT 476
Query: 195 FYKKYKMKIVVGEDGTVH 248
F +K K +++ G DG V+
Sbjct: 477 FTRKDKYRVLAGNDGIVN 494
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 150 EKQIVAEKVKEQRSTFYKKYKMKIVVGEDGT-VHEYGCAKDTPR--CFPTVKG 299
+ Q + ++ ++ T +KYK+K+V + GT + G K P P++KG
Sbjct: 56 QDQFLNSFMQTRKGTLVQKYKIKVVADDPGTSSSKDGDGKQAPNGSAQPSIKG 108
>01_06_1462 +
37530509-37530874,37531012-37531099,37531352-37531484,
37531567-37532326
Length = 448
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 9 EYLSKVPDPIAL--PFPESLYLQTYVKMAKVQVLYHTFGPGRKVLKTLPEKQIVAEKVKE 182
E+ K+ P+++ P P +Q Y+K + + YH + V+ K ++A K
Sbjct: 109 EFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLA--AKR 166
Query: 183 QRSTFYKKYKMKIVVG 230
R T +Y + +V G
Sbjct: 167 HRKTTCTEYTISMVSG 182
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 345 LRNMREVTKHVLDVLEQAGVRC 410
L N RE+TK L +L+ AGV+C
Sbjct: 391 LINGREITKSELQMLKLAGVQC 412
>05_03_0167 - 9111581-9111694,9111864-9112358
Length = 202
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 156 QIVAEKVKEQRSTFYKKYKMKIVVGEDGT-VHEYGCAKDTP--RCFPTVKG 299
Q + ++ ++ T +KYK+K+V + GT + G K P P++KG
Sbjct: 58 QFLKSFMQTRKGTLVQKYKIKVVADDPGTSSSKDGDGKQAPDGSAQPSIKG 108
>01_01_1184 -
9430623-9430658,9430945-9431013,9431104-9431270,
9431596-9431693,9431790-9431929,9432911-9433120,
9434314-9434832
Length = 412
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 220 LLSEKMEQYTNMDVLKIHRDVFQQSKANLPTSTRINTLRLAVSEICVKLRNTFWMYWS 393
LL +E + D+ + R + + K+ L I T + + EI L+NTFW + S
Sbjct: 201 LLEFNVEIFFPHDLNSLPRG-YDKHKSKLGDEPHIMTSKSLLVEILKTLKNTFWPFQS 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,333,027
Number of Sequences: 37544
Number of extensions: 266333
Number of successful extensions: 746
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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