Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0667
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 8e-26
SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.074
SB_55714| Best HMM Match : LicD (HMM E-Value=1.3) 29 1.6
SB_17382| Best HMM Match : Gpi1 (HMM E-Value=2.6) 29 1.6
SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26) 28 2.8
SB_19637| Best HMM Match : Cullin (HMM E-Value=0) 28 2.8
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 3.7
SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038) 28 3.7
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_29055| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_991| Best HMM Match : UCH (HMM E-Value=1.2) 27 6.4
>SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 113 bits (271), Expect = 8e-26
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
Frame = +3
Query: 3 KTEYLSKVPDPIALPFPESLYLQTYVKMAKVQVLYHTFGPGRKVLKTLPEKQIVAE-KVK 179
KT +L + P PFP+SL++Q + ++L+ + P R L T P + +K
Sbjct: 227 KTAFLHSLSTPYMRPFPQSLFIQASIHHVHTKLLFKSSIPRRIELFTNPHNDWKHKHNMK 286
Query: 180 EQRSTFYKKYKMKIVVGEDGTVHEYGCAKDTPRCFPT-VKGKPSYVYSDKHTPPCCLRNM 356
E+ YK++ +K V DGTV YGC K+T RCF T V P+Y+Y+++ TPPCCL ++
Sbjct: 287 ERHIQMYKRFGIKKVDLPDGTVQWYGCGKNTKRCFGTIVDDMPAYLYNNQWTPPCCLEHL 346
Query: 357 REVTKHVLDVLEQAGVRCWLE 419
RE +HV +VL+ +GV WLE
Sbjct: 347 RESARHVFEVLDNSGVSYWLE 367
>SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +3
Query: 195 FYKKYKMKIVVGEDGTVHEYGCAKDTPRCFPTVKGKPSYVYSDKHTPPCCLRNMREVTKH 374
F K+ ++ +V DG V YGC + T P V PPCCL N+ + K
Sbjct: 402 FANKHSIRKIVELDGRVRWYGCRRGV--IHRTADKCP--VREGLLVPPCCLENLADAVKF 457
Query: 375 VLDVLEQAGVRCWLE 419
++ E + C L+
Sbjct: 458 LMSQCESNSIVCELQ 472
>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 33.5 bits (73), Expect = 0.074
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = -2
Query: 419 FQPASDTSLLQYIQNVFRNF----THISETARRSVFIRVDVGRFAFDCWKTSRCIFSTSI 252
+QP D +Y+Q +F TH++ +R +F +GR+ C+ + C +
Sbjct: 28 YQPPFDADSCEYLQQSLTDFFSLVTHLNGPSRAPLFGLFALGRYPESCYSSEVCACTCVC 87
Query: 251 FVYCSIFSDNNLHFIFLIECR 189
C ++ +N F ++E R
Sbjct: 88 VCVCGVYYFDN-QFKEILEAR 107
>SB_55714| Best HMM Match : LicD (HMM E-Value=1.3)
Length = 406
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +3
Query: 192 TFYKKYKMKIVVGEDGTVHEYGCAKDTPRCFPTVKGKPSYVYSDKHTPPCCLRNMREVTK 371
T KK+++ VV G H + C+ RC K S++ P CCL E K
Sbjct: 155 TLAKKWQLNRVVLSTGKTHSFSCSDLDFRC--ERKVTKSFL-----LPVCCLELYTEALK 207
Query: 372 HVLDVLEQAGVRCWLET 422
D L++ V L++
Sbjct: 208 FFKDFLDKHNVHFELDS 224
>SB_17382| Best HMM Match : Gpi1 (HMM E-Value=2.6)
Length = 280
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -1
Query: 225 QQSSFYISYRMSTSALSLFQQLFVFLAMFLRLYVPVQ 115
Q S Y+S R ++L+ FQ+ F+ + M LRL VP Q
Sbjct: 68 QHVSPYVSRRSDLTSLNSFQE-FIIVLMKLRLNVPFQ 103
>SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26)
Length = 370
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 135 LKTLPEKQIVAEKVKEQRSTFYKKYKMKIVVGEDGTVHEYGCAKDTPRCFPTVKGK 302
LK+ +K IV +E+ F + +GE G+ E TPR T+K K
Sbjct: 153 LKSNHQKYIVLASGRERTKVFVNNVGLVSTIGEGGSFGELALIYGTPRA-ATIKAK 207
>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
Length = 685
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +3
Query: 174 VKEQRSTFYKKYKMKIVVGED-GTVHEYGCAKDTPRCFPTVKGKPSYVYSDKHTPPCCLR 350
VK +K+ IV E+ G +H K C V + + SDK CC+
Sbjct: 192 VKVVEEELIRKHMKTIVDMENSGVIHMLKHDKIEGTCCMMVMSTVNTLISDKIEGTCCMM 251
Query: 351 NMREVTKHVLDVLE 392
+ V H+ D +E
Sbjct: 252 VISTVNTHISDKIE 265
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 84 MAKVQVLYHTFGPGRKVLKTLPEKQIVAEKVKEQRSTFYKKY 209
+A Q++YH GP K L T KQ++ E + + ++Y
Sbjct: 1424 IAGTQLIYHGTGPSTKNLTTEQAKQVLNENELGTMTYYIREY 1465
>SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 222 VVGEDGTVHEYGCAKDTPRCFPTVKGKPSYVYSDKHTPPCCLRNMREVTKHVLDVLEQ 395
++ DG V GC +C +++ +T PCC RN E+ H+ +L++
Sbjct: 217 IIQTDGHVEYPGCTMGRRQC--NWAHFDNHLNMRINTDPCCRRNGLEMAHHLATLLDK 272
>SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)
Length = 451
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 62 IFADICEDGQGTSTLSYIWTG 124
IFAD+ +GT S+IW G
Sbjct: 119 IFADVMHSNKGTKARSHIWNG 139
>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1420
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 303 PSYVYSDKHTPPCCLRNMREVTKHVLDV---LEQAGVRCWLE 419
PS V S +PP L ++ + L++ L +AG+ CW++
Sbjct: 1330 PSPVASPSSSPPVFLSYQWDMQETALELGRQLREAGIECWMD 1371
>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 224 NNLHFIFLIECRPLLFHFFSNYLFFW 147
N+LH C P+ F FFS++ F W
Sbjct: 183 NSLHNTTRTTCWPITFIFFSSFSFKW 208
>SB_29055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 272 CIFSTSIFVYCSIFSDNNLHFI 207
CIF + V C I SD+N +FI
Sbjct: 87 CIFLKEVGVQCIIISDSNTYFI 108
>SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1526
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 258 IHIRVLFHLLRQQSSFYISYRMSTSALSLFQQLFVFLAMFLRLYVPVQMYDRVL 97
I I ++F LLR F SYR+ AL+L L + L L + V + ++
Sbjct: 415 IKIFIMFRLLRVFRLFRFSYRLQIMALALKGSLHELGLLLLILVISVIFFSTLV 468
>SB_991| Best HMM Match : UCH (HMM E-Value=1.2)
Length = 226
Score = 27.1 bits (57), Expect = 6.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 354 YFGDSKAECVYPSRRRKVCL 295
+FG+ KA C Y +R ++V L
Sbjct: 161 FFGEGKATCTYDARHKRVIL 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,443
Number of Sequences: 59808
Number of extensions: 311861
Number of successful extensions: 1118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -