Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0667
         (423 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   4.6  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   4.6  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   6.0  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    23   6.0  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 231 EDGTVHEYGCAKDTPRCFPTVKGK 302
           +  T H  GC   +P CF   +G+
Sbjct: 447 QKATEHVIGCVLCSPGCFSLFRGR 470


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 248 VYCSIFSDNNLHFIFLIECRPLLFHFFSNY 159
           VYC +  +    +I LIE  P   HF  +Y
Sbjct: 745 VYCKLMYNRERSYIPLIEAEPK--HFLCSY 772


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -2

Query: 410 ASDTSLLQYIQNVFRNF 360
           ++ T+L+ ++ N+FR+F
Sbjct: 587 STSTNLMSFVTNIFRSF 603


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 409 HLTPACSSTSRTCFVTSRIFRRQQ 338
           HL P C+ +    F+   +F+ Q+
Sbjct: 591 HLKPGCAPSVLIMFINMMLFKNQE 614


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,310
Number of Sequences: 2352
Number of extensions: 11430
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)