Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0667
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical p...    29   1.4  
AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine r...    27   5.5  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    27   5.5  
U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    27   7.3  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF039042-13|AAR12988.1|  249|Caenorhabditis elegans Hypothetical...    26   9.7  

>U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical
           protein R151.4a protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 117 GPGRKVLKTLPEKQIVAEKVKEQRSTFYKKYKMKIVVGE-DGTVHEYG-CAKDTPRC 281
           GP  +V+  +  KQ+ A  + E+R  F ++ +M   VG+ D  V  YG C  +  +C
Sbjct: 18  GPNGQVIP-VAVKQLKANAIDEEREEFVREIQMMQTVGQHDNIVTMYGYCMDEQLQC 73


>AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical
           protein Y41G9A.3 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 266 FSTSIFVYCSIFSDNNLHFIFLIECRPLL 180
           ++T+++    IF D N+H IF+++ R +L
Sbjct: 366 YTTTLWSLIEIFIDKNVHRIFMVDDRTIL 394


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 243 LFH--LLRQQSSFYISYRMSTSALSLFQQLFVFLAMFLRLYVPVQM 112
           LFH  +L ++S    S  +  +A + F  +F F+ M +R+YV VQM
Sbjct: 51  LFHFTILTRKSMRNTSINIIMAAAA-FCDIFSFIEMLMRIYVNVQM 95


>AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.5 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 218 LHFIF-LIECRPLLFHFFSNYLFFWQCF*DFTSRSKCMIEY 99
           +H I  +IE  PLL++++ ++   ++CF  F S SK +  Y
Sbjct: 79  IHMICNIIEFCPLLYNYYFSFEISFECF-PFASYSKIVSNY 118


>AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine
           receptor, class i protein73 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 156 VFLAMFLRLYVP-VQMYDRVLVPWPSSHMSANIMIL 52
           +FL + L   VP V +   +L+ W +SH S N++ L
Sbjct: 258 IFLTLVLIFEVPHVNVIGEILIAWFASHSSINMISL 293


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -1

Query: 207 ISYRMSTSALSLFQQLFVFLAMFLRLYVPVQMYDRVLVPWPSSHMSANIMILETATQSDL 28
           ISY++     S+    FVF  +   +  P+  +D V VP  SS    N  I+    + ++
Sbjct: 405 ISYKLHYQQYSIVNDFFVFRVVSPAVSSPLLRFDIVYVPKESSIRLVNKTIV--VKEEEI 462

Query: 27  APLT 16
           A +T
Sbjct: 463 ASIT 466


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +3

Query: 111 TFG--PGRKVLKTLPEKQIVAEKV----KEQRSTFYKKYKMKIVVGEDGTVHEYGCAKDT 272
           TFG  P RK + T+    I  EKV    KEQ    +  Y  K+    D    +YG  KD 
Sbjct: 276 TFGYLPFRKPIDTVVGAPIPVEKVENPTKEQIDELHTIYCQKLTELFDEHKEKYGVEKDV 335

Query: 273 P 275
           P
Sbjct: 336 P 336


>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 386 YIQNVFRNFTHISETARRSVFIRVDVGRFAFDCWKTSRCIFSTSIFVYCSIFSD 225
           YI   F NF    E +   +   +   +F   C  T+RC+  T+   +C++F +
Sbjct: 501 YILGEFGNFIAGDERSTAKIQFELLHSKFHL-CSITTRCLLLTTYIKFCNLFPE 553


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/35 (25%), Positives = 24/35 (68%)
 Frame = +1

Query: 217 RLLSEKMEQYTNMDVLKIHRDVFQQSKANLPTSTR 321
           RLL +++    ++++ ++HRD++ +++ N+   TR
Sbjct: 659 RLLRQQLATTKSLEMAQLHRDLWAENEKNMEHWTR 693


>AF039042-13|AAR12988.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK697.14 protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 225 QQSSFYISYRMSTSALSLFQQ 163
           +Q   YI+YRMS SAL+ F +
Sbjct: 163 KQPGIYIAYRMSKSALNSFSK 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,635
Number of Sequences: 27780
Number of extensions: 245462
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)