Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0667
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   10.0 

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 278 SRCIFSTSIFVYCSIFSDNNLHFIFLIECRPLL 180
           +R + S     YC++FS +  HF  +++  PL+
Sbjct: 529 ARRVASVRAETYCNLFSLSVDHFNAVLDQYPLM 561


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 278 SRCIFSTSIFVYCSIFSDNNLHFIFLIECRPLL 180
           +R + S     YC++FS +  HF  +++  PL+
Sbjct: 497 ARRVASVRAETYCNLFSLSVDHFNAVLDQYPLM 529


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 3   KTEYLSKVPDPIALPFPESLYLQT---YVKMAKVQVLY 107
           K + +SKVP P +LP   + ++ +   Y K+ K+   Y
Sbjct: 46  KFKTVSKVPGPFSLPIFGTRWIFSCIGYYKLNKIHDAY 83


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -1

Query: 237 HLLRQQSSFYISYRMSTSALSLFQQLFVFLAMFLRLYVPVQMYDRVLVPWPS 82
           H   Q S   +SY  +  A      +FVF+A+     V + + D    P P+
Sbjct: 291 HAKSQASLPPVSYLKAVDAFMSVCTVFVFMALMEYCLVNIVLGDSDTPPKPA 342


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 239 SIFSDNNLHFIFL 201
           S FSD N+H  FL
Sbjct: 133 SAFSDKNIHVSFL 145


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 90  KVQVLYHTFGPGRKVLKTLPEKQI 161
           + Q L   F   RK++ TLP  ++
Sbjct: 265 RTQSLNEAFAALRKIIPTLPSDKL 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,494
Number of Sequences: 438
Number of extensions: 2952
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)