Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0664
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 60 3e-10
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 32 0.061
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 31 0.11
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 28 0.75
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 1.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 27 2.3
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 26 4.0
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 4.0
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 5.3
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 7.0
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 25 7.0
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 7.0
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 9.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 9.2
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 59.7 bits (138), Expect = 3e-10
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 10/185 (5%)
Frame = +3
Query: 3 CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
C+DEP K F I + N LSN T + T F T MST+ + +
Sbjct: 154 CWDEPALKATFTIDITAKENYTILSNMNAVEE---TVKDGLKTARFAETCRMSTYLLAWI 210
Query: 183 IADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPLPLK 362
+A+L+ + K + + +RV+ + + E K + ++ P PL
Sbjct: 211 VAELEYVEYFTPGK--HCPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSGVFGEPYPLP 268
Query: 363 KLDMVALPNYQGVRPADNWGLIVFKESEL----SNCKTVL------LVNEVLYQWLGVYV 512
K DMVA+P+++ +NWGL+ ++ + + + TV+ + +E+ +QW G V
Sbjct: 269 KCDMVAIPDFE-AGAMENWGLVTYRLAAILVSEDSAATVIERVAEVVQHELAHQWFGNLV 327
Query: 513 TPAWW 527
T +W
Sbjct: 328 TMQFW 332
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 31.9 bits (69), Expect = 0.061
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 481 SLTRRTVLQLLNSLSLNTIRPQLSAGLTPW*FGNATISNFFSGKGICHMFATSLNTLRNF 302
+L RTV + LSL+ IR ++ G+ +S +SG + A L+ +NF
Sbjct: 236 NLALRTVPHIFTELSLDAIRIVFFMSVSAGNLGDTALSYLYSGTAVRMSLAIGLHKCKNF 295
Query: 301 S 299
S
Sbjct: 296 S 296
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 31.1 bits (67), Expect = 0.11
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +2
Query: 8 RRAGIQDPVRNQRSTTPEHGGPQQYSDRENREYNRRTECSDGLLRVNASDVHVYCWSSHR 187
+RA + R H G S N Y R TEC G R ++ +H Y + R
Sbjct: 436 KRAHVSRRHSTSRKIAQSHTGSSSTSSAANVRY-RCTECLQGFSRPSSLKIHTYSHTGER 494
Query: 188 RF 193
F
Sbjct: 495 PF 496
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 28.3 bits (60), Expect = 0.75
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 177 LVIADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLKV 317
+ + DL L VHYK N IE R W ++ DG+ K +V
Sbjct: 273 IAVVDLYILPPLVHYKGTRKNQIESRSWSSRQ-----DGISLKIKEV 314
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 242 YRAARVGTKRIPSSVGRCRRKIPQSVQ*GSE-HVANSFTAKEIGYGRITKLPGR 400
Y + +GT PS G + V+ + V S+ +E+GYG + +P R
Sbjct: 4 YGVSSIGTSLTPSPTGSIDEYTSKEVKHPEDVKVDASYEKEEVGYGELEVVPER 57
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 202 WGTLCITKMTMEMISSCACGDEKNTFKRWTVS 297
W + +T ++ + SC GDE N K+ + S
Sbjct: 34 WVLIKVTNKQIDNVESCLSGDESNDSKKSSAS 65
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 273 YLQALDGVGEKFLKVFSEVANMWQIPLPLKKLDMVA 380
Y++ LD + +KF V V + IPL + +D+VA
Sbjct: 68 YVEMLDVLKKKFPNVDCRVGSAMAIPLEDESVDLVA 103
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 169 VNVDIGGVNSK*SVTAFGSPVIFSVLAIGVLLRATMFRG 53
V V +GGV + TAF PVI L +G L+ ++RG
Sbjct: 162 VVVFVGGVGLETPATAFPLPVICG-LIVGCLIGYFIYRG 199
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 525 TKQESRTHPTTGTVP 481
T+ E THPTTGT P
Sbjct: 36 TEGEEGTHPTTGTQP 50
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 153 PMSTFTVGLVIADLKQLGNTVHYKDDNGNDIELRVWGRKEYL 278
P + T V A++ L +++ G +IE R WG KEYL
Sbjct: 58 PWTIITTSFVDANVFTLLSSILILSVYGVEIE-RSWGHKEYL 98
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 267 FVPTRAARYHFHCHLCNA 214
F+P R A++H C +C A
Sbjct: 58 FLPWRKAKFHIPCVICGA 75
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 15 PGYKTPFEISVARP 56
PGYK P+E+ V +P
Sbjct: 348 PGYKQPWELDVGKP 361
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 511 TYTPNHWYSTSLTRRTVLQLLNSLSLNTIRPQLSAGLTP 395
TY PN S+ + + L+++S+N LS +P
Sbjct: 170 TYLPNSTIDLSILPHSTISTLSTVSINDTSASLSKTTSP 208
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 9.2
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 183 IADLKQLGNTVHYKDDNGND-IELRVWGRKEYLQALDGVGEKF-LKVFSEVANMWQIPLP 356
+ +L+ L H N N I+LR + +Y + + V + F VF + N IP P
Sbjct: 404 LIELRVLQTIAHSDPTNENKCIQLRDYF--DYRKHICIVTDLFGWSVFDFLKNNNYIPFP 461
Query: 357 LKKLDMVALPNYQGVRPADNWGLI 428
LK + M++ ++ V + GL+
Sbjct: 462 LKHIQMLSQQLFKSVAFLHSLGLV 485
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,923
Number of Sequences: 5004
Number of extensions: 50628
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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