Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0664
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 85 3e-17
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 82 3e-16
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 74 6e-14
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 72 3e-13
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 34 0.081
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 1.7
03_05_0355 - 23420410-23420548,23420643-23420794 29 2.3
01_01_0499 - 3675303-3675484,3676888-3676982,3677046-3677096,367... 29 2.3
07_03_1679 + 28616006-28616137,28616651-28616842,28616945-286171... 28 4.0
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 28 4.0
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 28 5.3
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 28 5.3
10_08_1022 + 22337332-22339398 27 7.1
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 27 7.1
10_08_1057 + 22594419-22594466,22594710-22594776,22595053-225952... 27 9.3
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 27 9.3
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 27 9.3
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 85.4 bits (202), Expect = 3e-17
Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 13/188 (6%)
Frame = +3
Query: 3 CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
C+DEP +K F++++ P +VALSN PI E I G P +Y E +P MST+ V +V
Sbjct: 146 CWDEPSFKAKFKLTLEVPSELVALSNMPIV-NEKIAG-PIKTVEY-EESPVMSTYLVAIV 202
Query: 183 IADLKQLGNTVHYKDDNGNDIEL--RVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPLP 356
+ L + + GN + + +V + ALD VG K L ++ E + P P
Sbjct: 203 VG----LFDYIEGVTSEGNKVRVYTQVGKSNQGKFALD-VGVKSLNLYKE---FFDTPYP 254
Query: 357 LKKLDMVALPNYQGVRPADNWGLIVFKE------SELSNCKT-----VLLVNEVLYQWLG 503
L KLDMVA+P++ +N+GL+ ++E + S+ T + + +E+ +QW G
Sbjct: 255 LPKLDMVAIPDFTN-GAMENYGLVTYREIYLLFDEQSSSASTKQNVAITVAHELAHQWFG 313
Query: 504 VYVTPAWW 527
VT WW
Sbjct: 314 NLVTMEWW 321
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 81.8 bits (193), Expect = 3e-16
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Frame = +3
Query: 3 CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
C+DEP +K F+I++ P VALSN P+ E + G AV YF+ TP MST+ V ++
Sbjct: 155 CWDEPSFKAIFKITLEVPSETVALSNMPVVE-EKVNGLIKAV--YFQETPIMSTYLVAVI 211
Query: 183 IADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPLPLK 362
+ + D + +V + AL+ V K L +F E + +P PL
Sbjct: 212 VGMFDYV--EAFTTDGTRVRVYTQVGKSAQGKFALE-VAVKTLVLFKE---YFAVPYPLP 265
Query: 363 KLDMVALPNYQGVRPADNWGLIVFKESEL---------SNCKTVLLV--NEVLYQWLGVY 509
K+DM+A+P++ +N+GL+ ++E+ L +N + V +V +E+ +QW G
Sbjct: 266 KMDMIAIPDFAS-GAMENYGLVTYRETALLFDEKHSAAANKQRVAVVVAHELAHQWFGNL 324
Query: 510 VTPAWW 527
VT WW
Sbjct: 325 VTMEWW 330
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 74.1 bits (174), Expect = 6e-14
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Frame = +3
Query: 3 CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
C+DEP +K F++++ P +VALSN P+A E I G + ++E +P MST+ V +V
Sbjct: 152 CWDEPAFKAKFKLTLEVPSELVALSNMPVA-CETIAGPIKTI--HYEESPLMSTYLVAIV 208
Query: 183 IADLKQLGNTVHYKDDNGNDIEL--RVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPLP 356
+ L + V GN + + +V + ALD +G K L + + + P P
Sbjct: 209 VG----LFDYVEGVTSEGNKVRVYTQVGKSSQGKFALD-IGVKSLNFYKD---YFDTPYP 260
Query: 357 LKKLDMVALPNYQGVRPADNWGLIVFKESEL 449
L KLDMVA+P++ +N+GL+ ++E L
Sbjct: 261 LPKLDMVAIPDF-AAGAMENYGLVTYREVSL 290
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 72.1 bits (169), Expect = 3e-13
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = +3
Query: 3 CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
C+DEP +K F++++ P +VALSN P+ + E + G V Y+E +P MST+ V +V
Sbjct: 142 CWDEPAFKAKFKLTLEVPSELVALSNMPVIK-ETVHGPLKTV--YYEESPLMSTYLVAIV 198
Query: 183 IADLKQL-GNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPLPL 359
+ + G+T+ + + +V + ALD V K L +F + + P PL
Sbjct: 199 VGLFDYIEGSTL---EGTKVRVYTQVGKSNQGKFALD-VAVKSLDLFKD---YFATPYPL 251
Query: 360 KKLDMVALPNYQGVRPADNWGLIVFKESEL 449
KLDMVA+P++ +N+GL+ ++E+ L
Sbjct: 252 PKLDMVAIPDF-AAGAMENYGLVTYRETAL 280
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 33.9 bits (74), Expect = 0.081
Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 9/178 (5%)
Frame = +3
Query: 3 CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
C D + PF++ N+VA+SN + +P T ++L+ P+S + LV
Sbjct: 341 CIDSATQRCPFDLEFTVSTNLVAVSNGDLLYQVLSKEDPPRKTYVYKLSTPVSAQWISLV 400
Query: 183 IADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPLPLK 362
+ + L + NDI + + L L+ F V+S + P
Sbjct: 401 VGPFEVL--------PDRNDISVSHMCLSQSLSKLENTISFFHSVYSCYEDYLAASFPFG 452
Query: 363 KLDMVALPNYQGVRPAD-NWGLIVFKESELSNCKTV-LLVN---EVLY----QWLGVY 509
V LP V P +F L + K + +++ +V Y QW G+Y
Sbjct: 453 LYKQVFLPPEMIVSPTSLGASTCIFNSDILHDEKVIDQIIDTRIKVAYALARQWFGIY 510
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 180 VIADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLK 314
V+ L G+T+H K D+G L+++G K + ++ +GEK +K
Sbjct: 226 VVLGLPVGGSTIHSKFDSGKQKILQIFG-KTSIPSVKFIGEKLIK 269
>03_05_0355 - 23420410-23420548,23420643-23420794
Length = 96
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 27 TPFEISVARPRNMVALSNTPIARTENITGEPNA 125
+PF + ARP A+ +P A +TG P+A
Sbjct: 43 SPFAAAAARPMAAAAMMGSPAAVAARLTGHPSA 75
>01_01_0499 -
3675303-3675484,3676888-3676982,3677046-3677096,
3677191-3677270,3677423-3677593,3677836-3677937,
3678092-3678244,3678392-3678523,3678702-3678788,
3678987-3679126,3679246-3679660
Length = 535
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -1
Query: 296 DTVQRLKVFFSSPHAQLDIISIVIFVMHSVPQLL 195
D + RL + ++ HA+ ++I +++ + H VP LL
Sbjct: 257 DELDRLPIEIAAIHAEREVIEVLLPLTHQVPTLL 290
>07_03_1679 +
28616006-28616137,28616651-28616842,28616945-28617110,
28617195-28617586
Length = 293
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Frame = -2
Query: 400 TPW*FGNATISNFFSGKGICH----MF--ATSLNTLRNFS 299
TP+ F NA SN S KG+ H +F ++ NT+RNF+
Sbjct: 216 TPYSFDNAYYSNLLSNKGLLHSDQVLFNGNSTDNTVRNFA 255
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +3
Query: 174 GLVIADLKQLGNTVH----YKDDNGNDIELRVWGRK 269
G + A L +GN VH DD N++ +R WG K
Sbjct: 99 GTLDAKLVTIGNIVHESVPVSDDEANNLIVRTWGEK 134
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 342 QIPLPLKKLDMVALPNYQGVRPADNWGLIVFKESELSNCKTVLL 473
Q+ LP ++ L GV+PA+NWG + ++N +++ L
Sbjct: 637 QLQLPNSVGELNNLQTLHGVKPAENWGGLTCPLDMMTNLQSLEL 680
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 180 VIADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLK 314
V+ L G+T+H K D+G L+++G K + ++ GEK +K
Sbjct: 201 VVLGLPVGGSTIHSKFDSGKQKILQIFG-KTSIPSVKFFGEKLIK 244
>10_08_1022 + 22337332-22339398
Length = 688
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 17 GIQDPVRNQRSTTPEHGGPQQYSDRENREYN 109
G D R QRS+TP Q++ R RE N
Sbjct: 100 GCDDDKRKQRSSTPAAAAEQEHRKRVLRELN 130
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 180 VIADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQALDGVGEKFLK 314
V+ L G+T+H K D+G L ++G K + ++ GEK +K
Sbjct: 236 VVLGLHVGGSTIHSKFDSGKQKILHIFG-KTSIPSVKFFGEKLIK 279
>10_08_1057 +
22594419-22594466,22594710-22594776,22595053-22595270,
22595425-22595981,22596398-22597217
Length = 569
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +3
Query: 354 PLKKLDMVALPNYQGVR---PADNWGLIVFKESELSNCKTVLLVNEVLYQWL 500
PLK + MV + +++ + PADN L +++LSN ++V L + ++WL
Sbjct: 248 PLKSVVMVFVASFKKRKLEVPADNALLYEGDDADLSNGQSVKLAHTDGFRWL 299
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 24 KTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTP 152
+ P ++ PRN + T IAR + + PN++T EL P
Sbjct: 530 RMPISSDLSNPRNFI----TKIARYDKVVNIPNSMTILDELLP 568
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +3
Query: 174 GLVIADLKQLGNTVH----YKDDNGNDIELRVWGRK 269
G + A L +GN VH DD N++ +R WG +
Sbjct: 99 GTLDAKLVTIGNIVHESVPVSDDEANNLIVRTWGER 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,544
Number of Sequences: 37544
Number of extensions: 340227
Number of successful extensions: 932
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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