Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0664
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.16 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          26   0.27 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 135 YFELTPPMSTFTVGLVIADLKQLGNTVHYK 224
           YFEL PP  T    + I  L +L N V  K
Sbjct: 201 YFELLPPNRTINSVVYIEQLTKLNNAVEEK 230


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 135 YFELTPPMSTFTVGLVIADLKQLGNTVHYK 224
           YFEL PP  T    + I  L +L N +  K
Sbjct: 80  YFELLPPNRTINSVVYIEHLTKLNNAIEEK 109


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/53 (24%), Positives = 20/53 (37%)
 Frame = +2

Query: 5   LRRAGIQDPVRNQRSTTPEHGGPQQYSDRENREYNRRTECSDGLLRVNASDVH 163
           LR  G++ P ++Q+        PQQ    + +       C   LLR      H
Sbjct: 13  LRNGGVEHPHQHQQHYGAAVQVPQQTQSVQQQSQQAGDPCDPSLLRQGVPGHH 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 420  PSYQPA*RPGSLVMRPYPISLAVKE-FATCSLPH*TL*GIFRRHRPTLEG 274
            PSY+PA  PG       P S A  + FAT +    +  G+  R  P   G
Sbjct: 885  PSYKPASTPGCSSKNGEPTSAAFAQGFATAA----SSPGLLERASPAFSG 930


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 75  SNTPIARTENITGEPNAV 128
           +NTP  +  NI G+P AV
Sbjct: 885 TNTPAKKATNIGGKPVAV 902


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 23  QDPVRNQRSTTPEHGGPQQYSDRENREYNRR 115
           ++ + N+  TTPE+      S  ++R+Y  R
Sbjct: 73  EEDLMNKLPTTPEYNNHLYGSTPDSRDYFSR 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,324
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)