Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0664
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    87   9e-18
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    37   0.010
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ...    28   3.4  
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea...    28   4.5  
At2g47440.1 68415.m05921 DNAJ heat shock N-terminal domain-conta...    27   5.9  
At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family...    27   5.9  
At1g64390.1 68414.m07298 endo-1,4-beta-glucanase, putative / cel...    27   5.9  
At1g63000.1 68414.m07114 expressed protein                             27   5.9  
At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family prote...    27   5.9  
At5g15730.1 68418.m01840 serine/threonine protein kinase, putati...    27   7.8  
At1g56690.1 68414.m06520 pentatricopeptide (PPR) repeat-containi...    27   7.8  
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi...    27   7.8  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 86.6 bits (205), Expect = 9e-18
 Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
 Frame = +3

Query: 3   CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
           C+DEP  K  F+I++  P ++VALSN PI   E + G    V+  ++ +P MST+ V +V
Sbjct: 148 CWDEPACKATFKITLEVPTDLVALSNMPIME-EKVNGNLKIVS--YQESPIMSTYLVAIV 204

Query: 183 IADLKQLGNTVHYKDDNGNDIELRVW---GRKEYLQALDGVGEKFLKVFSEVANMWQIPL 353
           +      G   + +D   + I++RV+   G+ +  +    VG K L +F E    + +P 
Sbjct: 205 V------GLFDYVEDHTSDGIKVRVYCQVGKADQGKFALHVGAKTLDLFKE---YFAVPY 255

Query: 354 PLKKLDMVALPNYQGVRPADNWGLIVFKESEL---------SNCKTV--LLVNEVLYQWL 500
           PL K+DM+A+P++      +N+GL+ ++E+ L         SN + V  ++ +E+ +QW 
Sbjct: 256 PLPKMDMIAIPDF-AAGAMENYGLVTYRETALLYDEQHSAASNKQRVATVVAHELAHQWF 314

Query: 501 GVYVTPAWW 527
           G  VT  WW
Sbjct: 315 GNLVTMEWW 323


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 5/177 (2%)
 Frame = +3

Query: 3   CFDEPGYKTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTPPMSTFTVGLV 182
           C D+  ++  F++    P N VA+S   +        +    T  +EL  P++   V LV
Sbjct: 194 CIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTQKTYVYELAIPIAPRWVSLV 253

Query: 183 IADLKQLGNTVHYKDDN---GNDIELRVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPL 353
              L+ L +  ++   N    +D+  R+    E+        E +L          Q+ L
Sbjct: 254 AGPLEILPDQTNFLISNLCLPHDLS-RLRNTMEFFHEAYSYYEDYLSANFPFGFYKQVFL 312

Query: 354 PLKKLDMVALPNYQGVRPADNWGLIVFKESELSNC--KTVLLVNEVLYQWLGVYVTP 518
           P    +MV   +  G   +     I++ E  +       + L + +  QW GVY+TP
Sbjct: 313 PP---EMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQWFGVYITP 366


>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
           protein contains Pfam profile PF02809: Ubiquitin
           interaction motif
          Length = 599

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 237 NDIELRVWGRKEYLQALD---GVGEKFLKVFSEVANMWQIPLPLKKLDMVALPNYQGVRP 407
           N++ELR    +    A D   G G   ++ F +VA    I LP+KKLD +    +  +  
Sbjct: 413 NELELRESQIRRAFDARDQSGGGGFITVEAFHQVAQETNIRLPIKKLDDICATGF--IVW 470

Query: 408 ADNWGLIVFKESELSNCK 461
           ++ W +I+  +  L   K
Sbjct: 471 SELWQVILELDQNLGGIK 488


>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
           family protein similar to Transducin beta-like 2 protein
           (WS beta-transducin repeats protein) (WS-betaTRP)
           (Williams-Beuren syndrome chromosome region 13 protein)
           (SP:Q9Y4P3) {Homo sapiens}
          Length = 430

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 5   LRRAGIQDPVRNQRSTTPEHGGPQQYSDRENREYNRRTECSD-GLLRVNASDVHVYCWSS 181
           + +A  QDP+RN +S  P        S   ++  N+R    D   L+ +   V   C+SS
Sbjct: 37  MAKAEPQDPIRNPKSNHPAPKKNHPKSQASDKNQNKRHHPLDLNTLKGHGDAVTGLCFSS 96

Query: 182 HRRFKAT 202
             +  AT
Sbjct: 97  DGKSLAT 103


>At2g47440.1 68415.m05921 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain; similar to
           GP|2104534|AF001308 (T10M13.11)
          Length = 526

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +3

Query: 240 DIELRVWGRKEYLQALDGVGEKFLKVFSEVANMWQIPLPLKKLDMVALPNYQGVRPADNW 419
           D  L +  R E    L      FL+ F +VA+M Q  +P  KLD     + QG   +D  
Sbjct: 49  DAALSISPRLETALELKARSLLFLRRFKDVADMLQDYIPSLKLDDEGSASSQGSSSSDGI 108

Query: 420 GLI 428
            L+
Sbjct: 109 NLL 111


>At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family
           protein
          Length = 291

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -2

Query: 316 TLRNFSPTPSNA*RYSFRPHTRSSISFPLSSL*CTVFPSCFKSAMTRPTVNVDIGGVNSK 137
           TLR  +PT +   RY    +   S+++   SL    FP   ++A     VNV + G    
Sbjct: 167 TLRAENPTSNMGVRYMMEKNGVVSLTYKNKSLGSGKFPGLSQAASGSDKVNVKLNGSTKN 226

Query: 136 *SVTAFGS--PVI 104
             V   GS  PV+
Sbjct: 227 AVVQPRGSKQPVV 239


>At1g64390.1 68414.m07298 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-beta-1,4-glucanase
           GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol.
           40, 323-332 (1999))
          Length = 620

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 102 NITGEPNAVTDYFELTPPMSTFTVGLVIADLKQLGNTVHYKDDNGNDIELRVWGRKEYLQ 281
           N+ G      D  +   PM+ FTV ++   + + GN +    + GN I+   WG   +++
Sbjct: 68  NLVGGYYDAGDNVKFGLPMA-FTVTMMAWSVIEYGNQLQANGELGNSIDAIKWGTDYFIK 126

Query: 282 A 284
           A
Sbjct: 127 A 127


>At1g63000.1 68414.m07114 expressed protein
          Length = 301

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 24  KTPFEISVARPRNMVALSNTPIARTENITGEPNAVTDYFELTP 152
           + P    +  PRN +    T IAR E +   PN++T   EL P
Sbjct: 167 RMPISSDLTNPRNFI----TKIARYEKVVDIPNSMTILDELLP 205


>At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family protein
           similar to GB:AAC99312 from [Arabidopsis thaliana]
           (Plant J. (1999) In press)
          Length = 478

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = -1

Query: 311 EEFFADTVQR-LKVFFSSPHAQLDIISIVIFVMHSVPQL 198
           EEF+ DT+++ LK    SP +++DI+ + + +++S P L
Sbjct: 107 EEFYIDTIEKVLKRNKISP-SEIDILVVNVSMLNSTPSL 144


>At5g15730.1 68418.m01840 serine/threonine protein kinase, putative
           similar to protein-serine/threonine kinase [Nicotiana
           tabacum] gi|505146|dbj|BAA06538
          Length = 434

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 26  DPVRNQRSTTPEHGGPQQYSDRENREYNRRTECSDGLLRVNASDV 160
           D    + S  PE+G P Q+    N      T  + G+ R N  D+
Sbjct: 65  DRANTESSQPPENGAPTQHQPWWNNHTKDLTVSASGIPRYNYKDI 109


>At1g56690.1 68414.m06520 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 704

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 282 ALDGVGEKFLKVFSEVANMWQIPLPLKKLDMVALPNYQGVRPADNWGLIVFKESELSNCK 461
           A  G+GE+ LK+F E+ +   +P  +  + ++   +Y G       GL +F+  E   C 
Sbjct: 408 ASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEE---GLEIFESMESKFCV 464

Query: 462 T 464
           T
Sbjct: 465 T 465


>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 736

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 59  EHGGPQQYSDRENREYNRRTECSDGLLRVNASDVHVYCWSSHRRFKATGE 208
           EH    Q+ + + +EY  R    D     N ++     W  H+   AT E
Sbjct: 425 EHEKASQHLEAQRKEYEDRENYLDKCQAKNKTERRKLQWQKHKNLMATQE 474


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,398
Number of Sequences: 28952
Number of extensions: 267733
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)