Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0662
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    30   0.25 
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    26   5.5  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.2  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.2  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   9.5  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    25   9.5  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 43  KTSTVSDADHRQPYASSAIYTELNFKDNNEIGDLRGCPDRRSHNNSIVRSCNGSIQYSNG 222
           +TS V   +H++  +S     ++N  + N   +  G  D +  NN+   S     + ++G
Sbjct: 401 QTSEVEANNHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEENNTAAESLINQEETTSG 460

Query: 223 E 225
           E
Sbjct: 461 E 461


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -1

Query: 601 FTANSFPIHSCACFLDSHTAAAAVYHIDLFDSPAPTSRCSNVCSFGWEF*SCSLVPANAI 422
           F+ NSFP +S   +  S T++ A Y    +  P P +  S+         SC+LV AN++
Sbjct: 138 FSCNSFPEYS--SYSASETSSVASY--SYYSGPNPATPSSS---------SCNLVNANSL 184

Query: 421 GDSRNLN 401
               N+N
Sbjct: 185 DIYLNIN 191


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 5   AYRRNSIQGLDASRRRPYQTRTTGSHTRQAPFTQNSISRTTTKSET*EVVRTDDPIT 175
           A R N+    D S++   + +TT S  +    T +S+ + +T   T + V+ + P+T
Sbjct: 197 AKRENAKVPKDVSKK---EAKTTKSKEKATKKTSSSVPKQSTGENTKKAVKLETPLT 250


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 283 LALCSLWSIYSKYCDNKSSIRHLNIVCFHYTILQCYCYGIVCPD 152
           L+L SL + Y     N S     N +   YT   CY  G + PD
Sbjct: 12  LSLGSLTTAYGANASNSSVPTPDNTLVVSYTNTSCYTSGPLSPD 55


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 642 YCFTLACICYYYHNSLLILFRSIV 571
           Y FT+A ICY   N L++LF S++
Sbjct: 585 YFFTIA-ICYACINPLVLLFASVL 607


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 630 LACICYYYHNSLLILFRSIV 571
           L+C+ +  HN+L + +RS+V
Sbjct: 31  LSCLAFMIHNTLGLFYRSVV 50


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 514 INLCDILPPPPYESPEN 564
           I++ DILPPP Y+  E+
Sbjct: 98  ISILDILPPPSYQELED 114


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 385 VCPAADLDYDYPQWHW 432
           V P A  D++YP+W W
Sbjct: 93  VDPVAREDHEYPEWLW 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,793
Number of Sequences: 5004
Number of extensions: 49883
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)