Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0662
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 34 0.10
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 34 0.10
AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical ... 31 0.71
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 29 2.2
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 29 2.2
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 29 3.8
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 29 3.8
Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical pr... 27 8.8
AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = +1
Query: 331 GSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGC 510
GS T S + SR+ P +D + P H+ S ++TS + E
Sbjct: 1198 GSRKTPTSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPNRMETSPEY-MFNHEMAP 1256
Query: 511 QINLCDILPPPPYESPENRH 570
+N PPPY+ P RH
Sbjct: 1257 PVNAMWYTTPPPYQDPNYRH 1276
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = +1
Query: 331 GSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGC 510
GS T S + SR+ P +D + P H+ S ++TS + E
Sbjct: 1198 GSRKTPTSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPNRMETSPEY-MFNHEMAP 1256
Query: 511 QINLCDILPPPPYESPENRH 570
+N PPPY+ P RH
Sbjct: 1257 PVNAMWYTTPPPYQDPNYRH 1276
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
glp-1 gene,complete cds. ).
Length = 1295
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = +1
Query: 331 GSCHTNRSGSRSRQDKSKVCPAADLDYDYPQWHWLGRENSFKIPIQTSRHSNIARSEQGC 510
GS T S + SR+ P +D + P H+ S ++TS + E
Sbjct: 1198 GSRKTPTSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPNRMETSPEY-MFNHEMAP 1256
Query: 511 QINLCDILPPPPYESPENRH 570
+N PPPY+ P RH
Sbjct: 1257 PVNAMWYTTPPPYQDPNYRH 1276
>AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical
protein Y37F4.6 protein.
Length = 384
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 226 IRHLNIVCFHYTILQCYC--YGIVCPDNLSGLRF 131
IRH++ V F+ +C C + CPD L G+RF
Sbjct: 127 IRHVDAVTFYQHAERCGCQIHPFACPDPLCGIRF 160
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 413 TIPNGIGWDERTASKFPSKRADIRTSRGRSRAV 511
TI NG GW E++ S FP D + S AV
Sbjct: 769 TIINGFGWPEKSTSYFPKWALDAIKASDTSNAV 801
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 413 TIPNGIGWDERTASKFPSKRADIRTSRGRSRAV 511
TI NG GW E++ S FP D + S AV
Sbjct: 767 TIINGFGWPEKSTSYFPKWALDAIKASDTSNAV 799
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 413 TIPNGIGWDERTASKFPSKRADIRTSRGRSRAV 511
TI NG GW E++ S FP D + S AV
Sbjct: 767 TIINGFGWPEKSTSYFPKWALDAIKASDTSNAV 799
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 412 DYPQWHWLGR-ENSFKIPIQTSRHSNIARSEQGCQ 513
++ Q H +G EN+F +P+Q R +R CQ
Sbjct: 408 NFSQQHTMGNNENTFSLPLQAPRQGKKSRKPSECQ 442
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 412 DYPQWHWLGR-ENSFKIPIQTSRHSNIARSEQGCQ 513
++ Q H +G EN+F +P+Q R +R CQ
Sbjct: 409 NFSQQHTMGNNENTFSLPLQAPRQGKKSRKPSECQ 443
>Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical
protein T07D10.4 protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 473 LVWMGILKLFSRPSQCHW 420
L+W+G+ S PSQC W
Sbjct: 82 LIWLGLYCFESDPSQCFW 99
>Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical
protein T04H1.6 protein.
Length = 368
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Frame = -1
Query: 592 NSFPIHSCAC--FLDSHTAAAAVYHIDLFDSPAPTSRCSNVCSFGWEF*SCSLVPANAIG 419
NS+ I+ C F D A + ID F S CS G F + A
Sbjct: 119 NSYAINYCDKREFPDDVLAQYGLERIDYFVYNTSCSHVFFQCSIGQTFPLACMSEDQAFD 178
Query: 418 DSRNLNQRPDKLCFCPVYSSIQICS 344
S + + FCP Y + C+
Sbjct: 179 KSTENCNHKNAIKFCPEYDHVMHCT 203
>AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical
protein H16D19.1 protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 473 LVWMGILKLFSRPSQCHW 420
L+W+G+ S PSQC W
Sbjct: 82 LIWLGLYCFESDPSQCFW 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,270,228
Number of Sequences: 27780
Number of extensions: 299588
Number of successful extensions: 1024
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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