Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0662
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ...    31   0.67 
At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas...    29   2.7  
At4g38550.1 68417.m05458 expressed protein                             28   4.7  
At5g45330.1 68418.m05564 expressed protein ; expression supporte...    28   6.2  
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    28   6.2  
At2g17785.1 68415.m02060 zinc-binding protein-related similar to...    28   6.2  
At5g06640.1 68418.m00750 proline-rich extensin-like family prote...    27   8.2  
At4g11910.1 68417.m01894 expressed protein hypothetical protein ...    27   8.2  
At4g08270.1 68417.m01366 hypothetical protein contains similarit...    27   8.2  

>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
           XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 1012

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 39  HQDVDRIRRGPPAAIRVKRHLHRTQFQGQQRNRRPERLSGQTI 167
           H+D D+ RR PP  I++KR+       G +  +   RL  QTI
Sbjct: 815 HEDGDK-RRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856


>At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase,
           cytosolic, putative / NAD-dependent
           glyceraldehyde-3-phosphate dehydrogenase, putative
           similar to glyceraldehyde-3-phosphate dehydrogenase
           [Pinus sylvestris] GI:1100223; contains Pfam profiles
           PF02800: Glyceraldehyde 3-phosphate dehydrogenase
           C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
           dehydrogenase NAD binding domain
          Length = 422

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 286 HDNVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDY 417
           H N +  INV++D     +  +    S++D S++ P ADL  DY
Sbjct: 136 HGNFKGSINVIDDSTLEINGKKVNVVSKRDPSEI-PWADLGADY 178


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 538 PPPYESPENRHNYGSEK 588
           PPPY +P+ R NY  E+
Sbjct: 204 PPPYRTPDRRSNYDKEQ 220


>At5g45330.1 68418.m05564 expressed protein ; expression supported
           by MPSS
          Length = 571

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 277 ELRHDNVQNEINVLEDDCGSCHTNRSGSRSRQDKSKVCPAADLDYDY 417
           E+R++ +   +NV +   G  +    G+  R+      P  D  YDY
Sbjct: 45  EIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDY 91


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 421 GDSRNLNQRPDKLCFCPVYSSIQICSCGKNR 329
           GD  N  +R   LCF  ++ S   C C  NR
Sbjct: 509 GDFDNKRERECFLCFYDLHMSASSCKCSPNR 539


>At2g17785.1 68415.m02060 zinc-binding protein-related similar to
           zinc-binding protein [Pisum sativum] GI:16117799
          Length = 192

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 61  DADHRQPYASSAIYTELNFKDNNEIGDLRGCPDRRSH 171
           D +H QP+       +LN  + N+I DL  C   ++H
Sbjct: 45  DPNHIQPHVQVCTMLDLNAFELNQISDLFDCSQIQNH 81


>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 689

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 535 PPPPYESPENRHNYGS 582
           PPPPY SP  + NY S
Sbjct: 512 PPPPYHSPSPKVNYKS 527


>At4g11910.1 68417.m01894 expressed protein hypothetical protein
           F7H19.100 -Arabidopsis thaliana,PID:e1310060
          Length = 466

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 490 ARSEQGCQINLCDILPPPP 546
           A S  GC+   C+ILP PP
Sbjct: 397 ATSHDGCKTPTCEILPEPP 415


>At4g08270.1 68417.m01366 hypothetical protein contains similarity
           to hypothetical proteins of [Arabidopsis thaliana]
          Length = 99

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 527 IYCRRRRMRVQKTGTTMDRKRISSELW 607
           +Y +RR+  + K  TT D ++ S  +W
Sbjct: 33  VYLQRRKKTISKPTTTEDEEKASQSMW 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,116
Number of Sequences: 28952
Number of extensions: 270533
Number of successful extensions: 1149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)