Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0661
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70268-2|CAA94218.1|   98|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.        29   3.8  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   5.0  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   5.0  

>Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical
           protein ZK520.4d protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 174 LNFRPVSEVWWRQSQSDVYD 115
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical
           protein ZK520.4c protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 174 LNFRPVSEVWWRQSQSDVYD 115
           +N RP++ V W    SDVYD
Sbjct: 43  INLRPITNVQWHHKFSDVYD 62


>Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical
           protein ZK520.4b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 174 LNFRPVSEVWWRQSQSDVYD 115
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical
           protein ZK520.4a protein.
          Length = 850

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 174 LNFRPVSEVWWRQSQSDVYD 115
           +N RP++ V W    SDVYD
Sbjct: 102 INLRPITNVQWHHKFSDVYD 121


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 592 THVFKYHFVAVKAKSAMCKNSICNQRVKTF 503
           + +FKYH+  +  KS+  KN +  Q    F
Sbjct: 165 SEIFKYHYTQIVPKSSNIKNKVIEQSTSDF 194


>Z70268-2|CAA94218.1|   98|Caenorhabditis elegans Hypothetical
           protein T21E8.5 protein.
          Length = 98

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 595 STHVFKYHFVAVKAKSAMC 539
           S HVFK HF A++ K A C
Sbjct: 47  SLHVFKEHFEAIRRKGAYC 65


>U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 174 LNFRPVSEVWWRQSQSDVYD 115
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 642 LPVFLKINKLYHIPLHPLMSSNIISWLSK 556
           LP+  K+  + H+P+ P+ + +I+ ++ K
Sbjct: 254 LPIHKKLKPVEHLPIRPISTESIVKFIQK 282


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 642 LPVFLKINKLYHIPLHPLMSSNIISWLSK 556
           LP+  K+  + H+P+ P+ + +I+ ++ K
Sbjct: 362 LPIHKKLKPVEHLPIRPISTESIVKFIQK 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,610,399
Number of Sequences: 27780
Number of extensions: 264110
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)