Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0657
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   1.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.2  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 252 NLRAILKKKSGKMQRLGILSIAQGL 326
           N RA +KK SG    L +  +AQGL
Sbjct: 278 NKRAKIKKASGTKNPLALQLMAQGL 302


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 301 PSRCILPDFF 272
           P++C+LPD F
Sbjct: 157 PTQCVLPDCF 166


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 301 PSRCILPDFF 272
           P++C+LPD F
Sbjct: 164 PTQCVLPDCF 173


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 34  GFYGPLAAIQEHRSDEGVRRRE*KERPP 117
           G   P +A+Q  R+D+  RR     +PP
Sbjct: 115 GDTSPNSALQRARADKTYRRSYTHAKPP 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,383
Number of Sequences: 336
Number of extensions: 1710
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)