Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0657
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0603 - 23580283-23580627,23580970-23581174,23581286-235814...    29   2.5  
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    28   4.4  
09_02_0372 + 8070452-8071012,8071114-8071221                           28   5.9  
05_03_0505 + 14773210-14773506                                         28   5.9  

>01_05_0603 -
           23580283-23580627,23580970-23581174,23581286-23581407,
           23581493-23581675
          Length = 284

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 158 SRPKGCSFCPERVSGGRSFHSLRRTPSSLR 69
           S P GCS CPE +  G+    ++ T +  R
Sbjct: 156 SSPHGCSLCPENMCKGKIIERIQATANGKR 185


>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 64  EHRSDEGVRRRE*KERPPDTRSGQKEQPLGRER 162
           EH ++ G R R  K RPP  R+ + E P  R+R
Sbjct: 895 EHNAEVGARNRN-KMRPPVDRNDRIEDPHARKR 926


>09_02_0372 + 8070452-8071012,8071114-8071221
          Length = 222

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 46  PLAAIQEHRSDEGVRRRE*KERPPDTRSGQKEQPLGRER 162
           PLAA  E +SDE   + E K   P       E+PL  E+
Sbjct: 99  PLAAPMEEQSDEAFLQAEKKHANPPMEEQIDEEPLQEEK 137


>05_03_0505 + 14773210-14773506
          Length = 98

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 349 PDNRNTAIRRKKRTKEI*HNYCFHLIIIF 435
           P N + A+R+ KRT+E+ H++ F   ++F
Sbjct: 17  PPNGSGALRQCKRTEEVCHDFLFFSPLLF 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,782
Number of Sequences: 37544
Number of extensions: 173866
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)