Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0657
         (560 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ250440-1|CAB70093.1|   72|Drosophila melanogaster guanine nucl...   113   2e-25
AE014134-1620|AAF52760.2|   72|Drosophila melanogaster CG3694-PC...   113   2e-25
AE014134-1619|AAF52761.2|   72|Drosophila melanogaster CG3694-PB...   113   2e-25
AE014134-1618|AAF52759.2|   72|Drosophila melanogaster CG3694-PA...   113   2e-25
AE013599-2505|AAF57836.1|  844|Drosophila melanogaster CG15844-P...    40   0.002
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    28   9.9  
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    28   9.9  

>AJ250440-1|CAB70093.1|   72|Drosophila melanogaster guanine
           nucleotide-binding proteingamma subunit protein.
          Length = 72

 Score =  113 bits (271), Expect = 2e-25
 Identities = 47/58 (81%), Positives = 54/58 (93%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           +  IENMKYQASM+RWPLS+SIA MR ++EENEKNDPLI+APDKKNNPWAEKGKC+IM
Sbjct: 15  KKQIENMKYQASMERWPLSKSIAEMRSFIEENEKNDPLINAPDKKNNPWAEKGKCVIM 72


>AE014134-1620|AAF52760.2|   72|Drosophila melanogaster CG3694-PC,
           isoform C protein.
          Length = 72

 Score =  113 bits (271), Expect = 2e-25
 Identities = 47/58 (81%), Positives = 54/58 (93%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           +  IENMKYQASM+RWPLS+SIA MR ++EENEKNDPLI+APDKKNNPWAEKGKC+IM
Sbjct: 15  KKQIENMKYQASMERWPLSKSIAEMRSFIEENEKNDPLINAPDKKNNPWAEKGKCVIM 72


>AE014134-1619|AAF52761.2|   72|Drosophila melanogaster CG3694-PB,
           isoform B protein.
          Length = 72

 Score =  113 bits (271), Expect = 2e-25
 Identities = 47/58 (81%), Positives = 54/58 (93%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           +  IENMKYQASM+RWPLS+SIA MR ++EENEKNDPLI+APDKKNNPWAEKGKC+IM
Sbjct: 15  KKQIENMKYQASMERWPLSKSIAEMRSFIEENEKNDPLINAPDKKNNPWAEKGKCVIM 72


>AE014134-1618|AAF52759.2|   72|Drosophila melanogaster CG3694-PA,
           isoform A protein.
          Length = 72

 Score =  113 bits (271), Expect = 2e-25
 Identities = 47/58 (81%), Positives = 54/58 (93%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           +  IENMKYQASM+RWPLS+SIA MR ++EENEKNDPLI+APDKKNNPWAEKGKC+IM
Sbjct: 15  KKQIENMKYQASMERWPLSKSIAEMRSFIEENEKNDPLINAPDKKNNPWAEKGKCVIM 72


>AE013599-2505|AAF57836.1|  844|Drosophila melanogaster CG15844-PA
           protein.
          Length = 844

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           RS    ++ +  M+R P+S + + M +Y+ E+E+ D L+    +K NP+ EK  C I+
Sbjct: 787 RSINLQLRREVEMERMPVSVACSLMMKYMLEHEEEDCLLSGFTQKVNPFREKSSCSIL 844


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
            ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 277  SLVRCNDSEYSVLLKDSVFIEY*KPDNRNTAIRRKKRT 390
            SL+ C+D+E+  +L D   IE  KP  +  +    K T
Sbjct: 2463 SLIECDDTEFDEMLNDIDMIERTKPVTKKESNALSKNT 2500


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
            protein.
          Length = 4876

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 277  SLVRCNDSEYSVLLKDSVFIEY*KPDNRNTAIRRKKRT 390
            SL+ C+D+E+  +L D   IE  KP  +  +    K T
Sbjct: 2463 SLIECDDTEFDEMLNDIDMIERTKPVTKKESNALSKNT 2500


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,714,874
Number of Sequences: 53049
Number of extensions: 304381
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)