Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0657
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeri...    54   9e-08
AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, ga...    54   9e-08
Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeri...    40   0.002
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    29   3.0  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    28   5.3  

>AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 2 protein.
          Length = 62

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 22/56 (39%), Positives = 39/56 (69%)
 Frame = +2

Query: 11  SIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           ++++++ Q +++R P++ S A +R + E  E  DPL++  DKK NPWAEK KC ++
Sbjct: 9   TVDSLRSQLNIERTPITVSAAELRRFTESQE--DPLVNPIDKKVNPWAEKSKCSML 62


>AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, gamma
           subunit protein 2 protein.
          Length = 62

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 22/56 (39%), Positives = 39/56 (69%)
 Frame = +2

Query: 11  SIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           ++++++ Q +++R P++ S A +R + E  E  DPL++  DKK NPWAEK KC ++
Sbjct: 9   TVDSLRSQLNIERTPITVSAAELRRFTESQE--DPLVNPIDKKVNPWAEKSKCSML 62


>Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical
           protein K02A4.2 protein.
          Length = 62

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           ++S E +  +A++ R  +S     + ++ E+N+ ND L+  P  ++NP+ EK  C ++
Sbjct: 5   KASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQHNPFQEKKSCSVL 62


>AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 1 protein.
          Length = 62

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 178
           ++S E +  +A++ R  +S     + ++ E+N+ ND L+  P  ++NP+ EK  C ++
Sbjct: 5   KASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQHNPFQEKKSCSVL 62


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 181 LHNNAFSFLGPRVVLFVRSVYQGVVLFILFDVLPHR 74
           L+ N FS    ++V+F+  ++   VL I F + P R
Sbjct: 110 LYKNVFSSKWTKLVIFISFIFSTTVLTIFFQIYPCR 145


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 5   RSSIENMKYQASMDRWPLSRSIAAMREYVEENEK 106
           +  + NM+ +A    W    S+ AM+EY E + K
Sbjct: 405 KDDLNNMRTEAEFATWKSRGSLKAMKEYFEGHRK 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,100
Number of Sequences: 27780
Number of extensions: 170371
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)