Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0657
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26590.1 68416.m03319 MATE efflux family protein similar to r...    28   4.9  
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i...    27   6.5  
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i...    27   6.5  
At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1) domain...    27   8.6  
At4g23160.1 68417.m03342 protein kinase family protein contains ...    27   8.6  
At1g33080.2 68414.m04081 MATE efflux family protein similar to r...    27   8.6  
At1g33080.1 68414.m04082 MATE efflux family protein similar to r...    27   8.6  

>At3g26590.1 68416.m03319 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 500

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 153 AQGLFFLSGACIRG----SFFSFSSTYSLIAAMLLDSGQRSIEAWYFMFSIL 10
           AQ ++  SG C       S+ +F + +S +   L  +    +E WYFM  IL
Sbjct: 241 AQLVYIFSGTCGEAWSGFSWEAFHNLWSFVRLSLASAVMLCLEVWYFMAIIL 292


>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 680

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 180 YIIMHFPFSAQGLFFLSGACIRGSFFSFSSTYSLIAAMLLDS 55
           ++   F  SAQ  F+L+  C   + +S +STYS     LL S
Sbjct: 15  FLTSSFTASAQDPFYLNHYCPNTTTYSSNSTYSTNLRTLLSS 56


>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 674

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 180 YIIMHFPFSAQGLFFLSGACIRGSFFSFSSTYSLIAAMLLDS 55
           ++   F  SAQ  F+L+  C   + +S +STYS     LL S
Sbjct: 15  FLTSSFTASAQDPFYLNHYCPNTTTYSSNSTYSTNLRTLLSS 56


>At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 809

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 89  VEENEKNDPLIHAPDKKNNPWAEKGK 166
           VEE  + +     P+KKNN  AEKGK
Sbjct: 294 VEEKSEGEGEDVEPEKKNNVLAEKGK 319


>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 165 FPFSAQGLFFLSGACIRGSFFSFSSTYSLIAAMLLDS 55
           F  SAQ  F+L+  C   + +S +STYS     LL S
Sbjct: 616 FKASAQNPFYLNHDCPNRTTYSSNSTYSTNLKTLLSS 652


>At1g33080.2 68414.m04081 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 490

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -3

Query: 177 IIMHF-PFSAQGLFFLSGACI---RG-SFFSFSSTYSLIAAMLLDSGQRSIEAWYFMFSI 13
           ++ H+ P  AQ LF   G C    RG S+ +F   + +    +   G   +E WY    I
Sbjct: 223 LVAHWLPNIAQVLFVTCGGCTETWRGFSWLAFKDLWPVFKLSVSSGGMICLELWYNSILI 282

Query: 12  LL 7
           LL
Sbjct: 283 LL 284


>At1g33080.1 68414.m04082 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 494

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -3

Query: 177 IIMHF-PFSAQGLFFLSGACI---RG-SFFSFSSTYSLIAAMLLDSGQRSIEAWYFMFSI 13
           ++ H+ P  AQ LF   G C    RG S+ +F   + +    +   G   +E WY    I
Sbjct: 223 LVAHWLPNIAQVLFVTCGGCTETWRGFSWLAFKDLWPVFKLSVSSGGMICLELWYNSILI 282

Query: 12  LL 7
           LL
Sbjct: 283 LL 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,201,398
Number of Sequences: 28952
Number of extensions: 148199
Number of successful extensions: 321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)