Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0656
         (764 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A7Y7 Cluster: ABC transporter permease protein; n=5; ...    34   4.4  

>UniRef50_Q4A7Y7 Cluster: ABC transporter permease protein; n=5;
           Mycoplasma hyopneumoniae|Rep: ABC transporter permease
           protein - Mycoplasma hyopneumoniae (strain 7448)
          Length = 279

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +1

Query: 52  ICNSNYIPTDHKSF*TFTKYKLHSFGNFY*HYRNLTKVESYSFVFLPAIRDLSLKKNDKI 231
           I N NY+ T+   F   T  +  SF NF+  YR++ K+E   F FL  I  LS+    K+
Sbjct: 132 ILNVNYLVTNAPVFSLITN-QFFSFFNFFYLYRSIKKIEKKQF-FLAKIDKLSIFTKFKL 189

Query: 232 MV 237
           ++
Sbjct: 190 II 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,267,678
Number of Sequences: 1657284
Number of extensions: 11524209
Number of successful extensions: 21953
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21951
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)