Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0656
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   3.9  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.1  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    26   5.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.0  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 368 YRIYFISLLTFIALNIWI 315
           YR YFIS L F + + WI
Sbjct: 489 YRFYFISALIFTSYSFWI 506


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 620 T*NLRNKPSNDIKVKPTVCSIGSIEM 543
           T NL NKP +     P++ SIGS+E+
Sbjct: 327 TSNLNNKPLSLSSTAPSMPSIGSVEL 352


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 646 YMKASAWRRSIIAESWY*QNHLFALKE 726
           Y K S W R  I + W+ Q+  F++K+
Sbjct: 205 YKKGSIWIREPIDQEWHQQDKKFSVKQ 231


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 272 FLNVYGTKITVCTMILSFFFKL 207
           FLN+YG K+ V +M +S+  KL
Sbjct: 569 FLNLYGHKLPVLSMDISYDSKL 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,022
Number of Sequences: 5004
Number of extensions: 54874
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)