Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0656
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    29   4.1  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    29   5.4  

>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 315 IIYFSLFHLNINSVVLKCLWN*NYSLYHDFVVFF 214
           +I+  LF  N+ +VV+  +W  N +L   F VFF
Sbjct: 472 VIFVMLFTTNLMTVVMLIIWESNIALASLFFVFF 505


>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 348 TANFYCSQHMDIIYFSLFHLNINSVVLKCL 259
           T N + SQHM+I+Y  L   N  S+ L CL
Sbjct: 283 TFNTHFSQHMEILYKYLKDKNHRSMALDCL 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,803
Number of Sequences: 37544
Number of extensions: 278870
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)