Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0656
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45090.1 68418.m05531 lectin-related low similarity to PP2 le...    29   2.6  
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At1g65240.1 68414.m07396 aspartyl protease family protein contai...    29   2.6  
At5g38520.1 68418.m04658 hydrolase, alpha/beta fold family prote...    28   5.9  

>At5g45090.1 68418.m05531 lectin-related low similarity to PP2
           lectin polypeptide [Cucurbita maxima] GI:410437;
           contains Pfam profile PF01582: TIR domain
          Length = 332

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 115 LHSFGNFY*HYRNLTKVESYSFVFLPAIRDLS 210
           LH  GNF  H RNLT    Y  VFL ++ D S
Sbjct: 220 LHMSGNF--HTRNLTPGTKYEVVFLVSLDDTS 249


>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 691

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 111 VFSESSKRFVISWDII*IAYESFFSPRAVSYHFE 10
           +F+   K+ V+SW ++  AY S   PR   Y F+
Sbjct: 467 IFNSIPKKDVVSWTVMISAYGSHGQPREALYQFD 500


>At1g65240.1 68414.m07396 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease profile;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]
          Length = 475

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 700 VSTSSRLLWTDARPMPSCKTNKKSKITRKISEINQVMISK 581
           V T S +LW + +P P C T         + ++N    SK
Sbjct: 91  VDTGSDILWINCKPCPKCPTKTNLNFRLSLFDMNASSTSK 130


>At5g38520.1 68418.m04658 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 362

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 578 KPTVCSIGSIEMRVQLNSPILKIFTSSN*QTPNANLY 468
           KP +   G  +    L+ P+ K FTS   Q PN NLY
Sbjct: 295 KPVLVLWGDQDGLTPLDGPVGKYFTSLPDQLPNFNLY 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,851
Number of Sequences: 28952
Number of extensions: 256372
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)